Actinosynnema pretiosum subsp. pretiosum strain ATCC 31280

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Pseudonocardiales

Family

Pseudonocardiaceae

Genus

Actinosynnema

Description

Actinosynnema pretiosum subsp. pretiosum strain ATCC 31280 is characterized by having a single replicon, which is a significant trait for its genetic stability and metabolic processes. The strain is documented under the accession number NZ_CP029607.1, providing a reference for researchers looking to access its genomic information. This strain is part of the Actinosynnema genus, which is known for producing bioactive compounds, including antibiotics. The genetic makeup indicated by its single replicon may suggest streamlined metabolic pathways, potentially facilitating efficient synthesis of secondary metabolites. The ecological role of Actinosynnema pretiosum subsp. pretiosum in its natural habitat likely involves interactions with other microorganisms and contributing to the soil microbiome's health, although specific ecological interactions are not detailed. Overall, the unique traits of Actinosynnema pretiosum subsp. pretiosum strain ATCC 31280 highlight its potential significance in biotechnology and pharmacology, particularly for antibiotic development and understanding microbial interactions in ecosystems. Further research could elucidate its specific contributions to microbial ecology and bioprospecting efforts.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPseudonocardiales
FamilyPseudonocardiaceae
GenusActinosynnema
SpeciesActinosynnema pretiosum
Strainsubsp. pretiosum strain ATCC 31280

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Actinosynnema pretiosum subsp. pretiosum strain ATCC 31280

Gene Summary

Adenine Count

1099026 bp

Thymine Count

1099016 bp

Guanine Count

3067283 bp

Cytosine Count

3074941 bp

Genome Length

8340266 bp

Protein-coding Genes

7159 genes

Non-Coding Genes

111 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rna polymerase sigma factorAPASM_RS09520Not AvailablePositive2088003 - 208914241215.6
duf397 domain-containing proteinAPASM_RS09525Not AvailableNegative2089327 - 20895066261.3
helix-turn-helix domain-containing proteinAPASM_RS09530Not AvailableNegative2089531 - 209038531309.7
zinc finger proteinAPASM_RS09535Not AvailablePositive2090573 - 20908068668.32
helix-turn-helix domain-containing proteinAPASM_RS09540Not AvailablePositive2090803 - 209167531793.1
hypothetical proteinAPASM_RS09545Not AvailableNegative2091785 - 209229118110.8
nad(p)-binding domain-containing proteinAPASM_RS09550Not AvailablePositive2092722 - 209430856434.5
alkaline phosphataseAPASM_RS09555Not AvailablePositive2094472 - 209631964184.3
hypothetical proteinAPASM_RS36495Not AvailablePositive2096437 - 209739932398.6
laci family dna-binding transcriptional regulatorAPASM_RS09565Not AvailableNegative2097512 - 209848334029.4

Displaying genes 1981 – 1990 of 7270 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.