Xanthomonas campestris pv. campestris strain Xcc8004_Xcc2

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Xanthomonas

Description

Xanthomonas campestris pv. campestris strain Xcc8004_Xcc2 is a Gram-negative, rod-shaped bacterium that is classified as an aerobe. This strain is motile, possessing flagella, which enables its mobility in its habitat, primarily associated with host plants. It thrives optimally at a temperature of 25°C and falls within the mesophilic temperature range. This bacterium has a unique biotic relationship, being free-living while also having a significant pathogenic impact on various host plants, particularly within the Viridiplantae group. Notably, Xcc8004_Xcc2 affects several members of the Brassicaceae family, including Brassica oleracea var. capitata (cabbage), Arabidopsis, Raphanus sativus (radish), and other related varieties. The health effects caused by this strain include black rot of cabbage and bacterial spot disease, which pose serious threats to cruciferous crops. With a single replicon and two membranes, Xcc8004_Xcc2 is structurally adapted for its interactions with host plants. The pathogenic traits of Xanthomonas campestris pv. campestris highlight its ecological role as a significant plant pathogen. The diseases it causes can lead to substantial agricultural losses, emphasizing the importance of understanding its biology and ecology for effective disease management strategies in crops.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusXanthomonas
SpeciesXanthomonas campestris
Strainpv. campestris strain Xcc8004_Xcc2

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Xanthomonas campestris pv. campestris strain Xcc8004_Xcc2
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Viridiplantae, Brassica oleracea var. capitata, Arabidopsis
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xanthomonas campestris pv. campestris strain Xcc8004_Xcc2

Gene Summary

Adenine Count

902637 bp

Thymine Count

905595 bp

Guanine Count

1672835 bp

Cytosine Count

1680108 bp

Genome Length

5161275 bp

Protein-coding Genes

4272 genes

Non-Coding Genes

214 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
abc transporter atp-binding proteinDFG54_RS00645Not AvailableNegative148510 - 14934630222.7
acyl-coa desaturaseDFG54_RS00650Not AvailablePositive149501 - 15070645476.8
ef-hand domain-containing proteinDFG54_RS00655Not AvailablePositive150735 - 15108812919.3
atp-binding cassette domain-containing proteinDFG54_RS00660Not AvailablePositive151149 - 15188626500.3
glycine betaine abc transporter substrate-binding proteinDFG54_RS00665Not AvailablePositive151883 - 15335552854.6
aminotransferase class v-fold plp-dependent enzymeDFG54_RS00670Not AvailableNegative153891 - 15507242105.8
ergothioneine biosynthesis protein egtbDFG54_RS00675Not AvailablePositive155138 - 15642748237.3
l-histidine n(alpha)-methyltransferaseDFG54_RS00680Not AvailablePositive156424 - 15741035974.7
duf3253 domain-containing proteinDFG54_RS00685Not AvailablePositive157426 - 1576989793.12
indolepyruvate ferredoxin oxidoreductase family proteinDFG54_RS00690Not AvailableNegative157885 - 161595133988.0

Displaying genes 211 – 220 of 4486 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Black rot of cabbageCausesPMC8042644
Black rotCausesPMC8042644
Black rotCausesPMC13117714
Bacterial spot diseaseCausesPMC8465007
Black rotCausesPMC10335992
Black-rot disease of cruciferous cropsCausesPMC5488342
Black-rot diseaseCausesPMC5488342

Displaying health effects 1 – 7 of 7 in total