Xanthomonas campestris pv. campestris strain Xcc8004_Xcc2

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Xanthomonas

Description

Xanthomonas campestris pv. campestris strain Xcc8004_Xcc2 is a Gram-negative, rod-shaped bacterium that is classified as an aerobe. This strain is motile, possessing flagella, which enables its mobility in its habitat, primarily associated with host plants. It thrives optimally at a temperature of 25°C and falls within the mesophilic temperature range. This bacterium has a unique biotic relationship, being free-living while also having a significant pathogenic impact on various host plants, particularly within the Viridiplantae group. Notably, Xcc8004_Xcc2 affects several members of the Brassicaceae family, including Brassica oleracea var. capitata (cabbage), Arabidopsis, Raphanus sativus (radish), and other related varieties. The health effects caused by this strain include black rot of cabbage and bacterial spot disease, which pose serious threats to cruciferous crops. With a single replicon and two membranes, Xcc8004_Xcc2 is structurally adapted for its interactions with host plants. The pathogenic traits of Xanthomonas campestris pv. campestris highlight its ecological role as a significant plant pathogen. The diseases it causes can lead to substantial agricultural losses, emphasizing the importance of understanding its biology and ecology for effective disease management strategies in crops.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusXanthomonas
SpeciesXanthomonas campestris
Strainpv. campestris strain Xcc8004_Xcc2

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Xanthomonas campestris pv. campestris strain Xcc8004_Xcc2
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Viridiplantae, Brassica oleracea var. capitata, Arabidopsis
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xanthomonas campestris pv. campestris strain Xcc8004_Xcc2

Gene Summary

Adenine Count

902637 bp

Thymine Count

905595 bp

Guanine Count

1672835 bp

Cytosine Count

1680108 bp

Genome Length

5161275 bp

Protein-coding Genes

4272 genes

Non-Coding Genes

214 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
avrbs1/avra family type iii secretion system effectorDFG54_RS10770Not AvailableNegative2433943 - 243527149503.1
type iii secretion system effector xophDFG54_RS23295Not AvailableNegative2435371 - 243644139911.0
glycerophosphodiester phosphodiesteraseDFG54_RS23890Not AvailableNegative2436717 - 24368033199.65
glycerophosphodiester phosphodiesteraseDFG54_RS10785Not AvailableNegative2436901 - 243774632191.1
glycerophosphodiester phosphodiesteraseDFG54_RS10790Not AvailablePositive2437745 - 243809313663.0
duf6119 family proteinDFG54_RS10795Not AvailableNegative2438269 - 243994862666.2
duf3320 domain-containing proteinDFG54_RS10800Not AvailableNegative2439972 - 2446352234535.0
hypothetical proteinDFG54_RS23680Not AvailableNegative2446439 - 24466096257.46
helix-turn-helix domain-containing proteinDFG54_RS23895Not AvailablePositive2446826 - 24469544568.68
tannase/feruloyl esterase family alpha/beta hydrolaseDFG54_RS10810Not AvailableNegative2447051 - 244878160874.7

Displaying genes 2161 – 2170 of 4486 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Black rot of cabbageCausesPMC8042644
Black rotCausesPMC8042644
Black rotCausesPMC13117714
Bacterial spot diseaseCausesPMC8465007
Black rotCausesPMC10335992
Black-rot disease of cruciferous cropsCausesPMC5488342
Black-rot diseaseCausesPMC5488342

Displaying health effects 1 – 7 of 7 in total