Streptomyces tsukubensis NRRL18488

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Kitasatosporales

Family

Streptomycetaceae

Genus

Streptomyces

Description

Streptomyces tsukubensis NRRL18488 is a notable actinobacterium characterized by the presence of flagella, which facilitates motility and may play a role in its ecological interactions. This species is documented with three distinct replicons, indicating a complex genomic structure that may contribute to its adaptability and resilience in various environments. The genomic data for Streptomyces tsukubensis NRRL18488 is accessible through multiple accession numbers: NZ_CP029157.1, NZ_CP029158.1, and NZ_CP029159.1. These sequences provide valuable insights into the genetic makeup of the organism, potentially offering information on its metabolic capabilities and biosynthetic pathways, which are significant for antibiotic production and other secondary metabolites often associated with Streptomyces species. The presence of flagella suggests that Streptomyces tsukubensis NRRL18488 may exhibit motility, which can enhance its ability to colonize diverse substrates and engage in interactions with other microorganisms in its habitat. This motility could be advantageous in soil environments, where nutrient availability and competition shape microbial communities. In summary, Streptomyces tsukubensis NRRL18488 is a motile actinobacterium with a complex genomic organization that may enable it to thrive in various ecological niches. Its flagella presence and genomic characteristics underline its potential role in biotechnological applications, particularly in natural product discovery and environmental sustainability.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderKitasatosporales
FamilyStreptomycetaceae
GenusStreptomyces
SpeciesStreptomyces tsukubensis
StrainNRRL18488

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Streptomyces tsukubensis NRRL18488
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Streptomyces tsukubensis NRRL18488 plasmid pSTS1, complete

Gene Summary

Adenine Count

3699 bp

Thymine Count

3715 bp

Guanine Count

8013 bp

Cytosine Count

9320 bp

Genome Length

24747 bp

Protein-coding Genes

25 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
peptidoglycan bridge formation glycyltransferase fema/femb family proteinSTSU_RS01910Not AvailablePositive499209 - 50034841968.2
murein biosynthesis integral membrane protein murjSTSU_RS01915Not AvailablePositive500273 - 50207861849.0
response regulator transcription factorSTSU_RS01920Not AvailablePositive502132 - 50281525177.5
hamp domain-containing sensor histidine kinaseSTSU_RS01925Not AvailablePositive503034 - 50448251485.4
germn domain-containing proteinSTSU_RS01930Not AvailablePositive504479 - 50508120547.8
s8 family peptidaseSTSU_RS01935Not AvailableNegative505116 - 50634241889.8
sdr family oxidoreductaseSTSU_RS01940Not AvailableNegative506408 - 50798557422.1
trypsin-like serine proteaseSTSU_RS01945Not AvailablePositive508334 - 50905624299.8
s8 family peptidaseSTSU_RS01950Not AvailableNegative509159 - 51032539170.7
hypothetical proteinSTSU_RS01955Not AvailablePositive511016 - 5112889239.03

Displaying genes 401 – 410 of 6615 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

2 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0003686(2E,6E,10E)-geranylgeranyl diphosphateC20H33O7P2Chemical structure of (2E,6E,10E)-geranylgeranyl diphosphateNot available
Average447.426Da
Monoisotopic447.171798138Da

Displaying 1–2 of 2 metabolites

Health Effects

No health effects information available for this bacterium.