Dokdonia sp. Dokd-P16

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Dokdonia

Description

Dokdonia sp. Dokd-P16 is a Gram-negative bacterium characterized by its rod shape. This species has been documented with a single replicon, which indicates a streamlined genomic structure that may contribute to its adaptability in various environments. The genomic information for Dokdonia sp. Dokd-P16 is cataloged under the accession number NZ_CP029151.1. The classification as a Gram-negative organism suggests that Dokdonia sp. Dokd-P16 possesses a thin peptidoglycan layer surrounded by an outer membrane, which is typical of this group. This structural characteristic can influence its interactions with the environment, including its susceptibility to antibiotics and its ability to engage in symbiotic relationships. The ecological significance of Dokdonia sp. Dokd-P16 may be linked to its habitat and potential roles within microbial communities. While specific ecological functions are not detailed, Gram-negative bacteria are often involved in nutrient cycling and can play crucial roles in marine ecosystems, particularly in organic matter decomposition and as primary producers in some environments. In summary, Dokdonia sp. Dokd-P16, with its Gram-negative rod shape and single replicon, exemplifies a specific adaptation that may enhance its ecological viability in diverse marine habitats. Further exploration of its ecological roles could provide insights into the dynamics of microbial communities in which it resides.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusDokdonia
SpeciesDokdonia sp. Dokd-P16
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dokdonia sp. Dokd-P16 chromosome, complete genome.

Gene Summary

Adenine Count

1140053 bp

Thymine Count

1137058 bp

Guanine Count

674797 bp

Cytosine Count

671539 bp

Genome Length

3623447 bp

Protein-coding Genes

3163 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
udp-glucose 6-dehydrogenaseDCS32_RS13440Not AvailablePositive3014325 - 301571951311.4
udp-n-acetylglucosamine 4,6-dehydratase (inverting)DCS32_RS13445Not AvailablePositive3015867 - 301688037781.5
udp-4-amino-4, 6-dideoxy-n-acetyl-beta-l-altrosamine transaminaseDCS32_RS13450Not AvailablePositive3016889 - 301808244274.3
pseudaminic acid cytidylyltransferaseDCS32_RS13455Not AvailablePositive3018075 - 301876126018.8
gnat family n-acetyltransferaseDCS32_RS16095Not AvailablePositive3018748 - 301974939081.9
pseudaminic acid synthaseDCS32_RS13465Not AvailablePositive3019754 - 302077337636.8
lipopolysaccharide biosynthesis proteinDCS32_RS13470Not AvailablePositive3020807 - 302200646033.6
hypothetical proteinDCS32_RS13475Not AvailablePositive3022006 - 302316644933.4
hypothetical proteinDCS32_RS13480Not AvailablePositive3023169 - 302448249985.1
phytanoyl-coa dioxygenase family proteinDCS32_RS13485Not AvailablePositive3024418 - 302515227723.2

Displaying genes 2701 – 2710 of 3219 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.