Dokdonia sp. Dokd-P16

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Dokdonia

Description

Dokdonia sp. Dokd-P16 is a Gram-negative bacterium characterized by its rod shape. This species has been documented with a single replicon, which indicates a streamlined genomic structure that may contribute to its adaptability in various environments. The genomic information for Dokdonia sp. Dokd-P16 is cataloged under the accession number NZ_CP029151.1. The classification as a Gram-negative organism suggests that Dokdonia sp. Dokd-P16 possesses a thin peptidoglycan layer surrounded by an outer membrane, which is typical of this group. This structural characteristic can influence its interactions with the environment, including its susceptibility to antibiotics and its ability to engage in symbiotic relationships. The ecological significance of Dokdonia sp. Dokd-P16 may be linked to its habitat and potential roles within microbial communities. While specific ecological functions are not detailed, Gram-negative bacteria are often involved in nutrient cycling and can play crucial roles in marine ecosystems, particularly in organic matter decomposition and as primary producers in some environments. In summary, Dokdonia sp. Dokd-P16, with its Gram-negative rod shape and single replicon, exemplifies a specific adaptation that may enhance its ecological viability in diverse marine habitats. Further exploration of its ecological roles could provide insights into the dynamics of microbial communities in which it resides.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusDokdonia
SpeciesDokdonia sp. Dokd-P16
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dokdonia sp. Dokd-P16 chromosome, complete genome.

Gene Summary

Adenine Count

1140053 bp

Thymine Count

1137058 bp

Guanine Count

674797 bp

Cytosine Count

671539 bp

Genome Length

3623447 bp

Protein-coding Genes

3163 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
metallophosphoesterase family proteinDCS32_RS11390Not AvailablePositive2527408 - 252789918480.4
peptidylprolyl isomeraseDCS32_RS11395Not AvailablePositive2528059 - 252899133107.2
yfit family bacillithiol transferaseDCS32_RS11400Not AvailablePositive2529099 - 252962620595.2
3-oxoacyl-acp synthase iii family proteinDCS32_RS11405Not AvailableNegative2529710 - 253071736985.9
abc1 kinase family proteinDCS32_RS11410Not AvailableNegative2530966 - 253229150317.1
tetr family transcriptional regulator c-terminal domain-containing proteinDCS32_RS11415Not AvailableNegative2532347 - 253303926624.8
molecular chaperone dnakDCS32_RS11420Not AvailablePositive2533355 - 253525967753.8
gliding motility-associated c-terminal domain-containing proteinDCS32_RS11425Not AvailablePositive2535724 - 2539545136508.0
type ii toxin-antitoxin system higb family toxinDCS32_RS11430Not AvailablePositive2539561 - 254037330017.4
ompa family proteinDCS32_RS11435Not AvailablePositive2540483 - 254250776735.0

Displaying genes 2291 – 2300 of 3219 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.