Hymenobacter nivis strain NBRC 111535

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Hymenobacter

Description

Hymenobacter nivis strain NBRC 111535 is a Gram-negative, non-spore-forming bacterium characterized by its rod shape and aerobic metabolic requirements. This strain is notable for its psychrotolerant nature, thriving optimally at a temperature of 16°C, which allows it to survive and function effectively in cooler environments. The strain possesses a single replicon, which is significant for understanding its genetic structure and stability. Its non-motile characteristic suggests that it does not possess flagella or other structures for movement, likely influencing its ecological niche and interactions within its habitat. Given its psychrotolerant capabilities, H. nivis may play an important role in cold environments, such as polar regions or high-altitude ecosystems. The ability to thrive at lower temperatures could make this organism significant in biogeochemical cycles, particularly in nutrient recycling processes in these colder habitats. The presence of H. nivis in such environments could also indicate its potential as a model organism for studying microbial life in extreme conditions. The accession number for H. nivis strain NBRC 111535 is NZ_CP029145.1, which is useful for researchers looking to access genomic and phenotypic data associated with this strain.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusHymenobacter
SpeciesHymenobacter nivis
Strainstrain NBRC 111535

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature16
Temperature rangepsychrotolerant
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hymenobacter nivis strain NBRC 111535 chromosome, complete genome.

Gene Summary

Adenine Count

943307 bp

Thymine Count

941308 bp

Guanine Count

1573217 bp

Cytosine Count

1569765 bp

Genome Length

5027597 bp

Protein-coding Genes

4514 genes

Non-Coding Genes

76 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sumf1/egtb/pvdo family nonheme iron enzymeDDQ68_RS14090Not AvailableNegative3185962 - 318698138362.7
porp/sprf family type ix secretion system membrane proteinDDQ68_RS14095Not AvailableNegative3187223 - 318821835616.2
uroporphyrinogen-iii synthaseDDQ68_RS14100Not AvailableNegative3188421 - 318920929680.6
duf4271 domain-containing proteinDDQ68_RS14105Not AvailableNegative3189291 - 319049943474.2
mray family glycosyltransferaseDDQ68_RS14110Not AvailableNegative3190526 - 319159638103.0
hypothetical proteinDDQ68_RS14115Not AvailableNegative3191645 - 319206715610.5
lipoyl(octanoyl) transferase lipbDDQ68_RS14120Not AvailableNegative3192148 - 319290027140.8
yran family proteinDDQ68_RS22915Not AvailablePositive3193064 - 319342313284.8
toxin-antitoxin system ywqk family antitoxinDDQ68_RS14130Not AvailableNegative3193441 - 319444838101.4
cyanophycinaseDDQ68_RS14135Not AvailableNegative3194514 - 319532328085.9

Displaying genes 2911 – 2920 of 4590 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.