Hymenobacter nivis strain NBRC 111535

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Hymenobacter

Description

Hymenobacter nivis strain NBRC 111535 is a Gram-negative, non-spore-forming bacterium characterized by its rod shape and aerobic metabolic requirements. This strain is notable for its psychrotolerant nature, thriving optimally at a temperature of 16°C, which allows it to survive and function effectively in cooler environments. The strain possesses a single replicon, which is significant for understanding its genetic structure and stability. Its non-motile characteristic suggests that it does not possess flagella or other structures for movement, likely influencing its ecological niche and interactions within its habitat. Given its psychrotolerant capabilities, H. nivis may play an important role in cold environments, such as polar regions or high-altitude ecosystems. The ability to thrive at lower temperatures could make this organism significant in biogeochemical cycles, particularly in nutrient recycling processes in these colder habitats. The presence of H. nivis in such environments could also indicate its potential as a model organism for studying microbial life in extreme conditions. The accession number for H. nivis strain NBRC 111535 is NZ_CP029145.1, which is useful for researchers looking to access genomic and phenotypic data associated with this strain.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusHymenobacter
SpeciesHymenobacter nivis
Strainstrain NBRC 111535

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature16
Temperature rangepsychrotolerant
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hymenobacter nivis strain NBRC 111535 chromosome, complete genome.

Gene Summary

Adenine Count

943307 bp

Thymine Count

941308 bp

Guanine Count

1573217 bp

Cytosine Count

1569765 bp

Genome Length

5027597 bp

Protein-coding Genes

4514 genes

Non-Coding Genes

76 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna-directed rna polymerase subunit betaDDQ68_RS12875Not AvailableNegative2884505 - 2888407145913.0
50s ribosomal protein l7/l12DDQ68_RS12880Not AvailableNegative2888661 - 288904113043.8
50s ribosomal protein l10DDQ68_RS12885Not AvailableNegative2889109 - 288965720029.1
50s ribosomal protein l1DDQ68_RS12890Not AvailableNegative2889673 - 289037124799.2
50s ribosomal protein l11DDQ68_RS12895Not AvailableNegative2890390 - 289083315864.3
transcription termination/antitermination protein nusgDDQ68_RS12900Not AvailableNegative2890953 - 289151621013.4
preprotein translocase subunit seceDDQ68_RS12905Not AvailableNegative2891531 - 28917257168.75
Trna-trpNot AvailableNot AvailablePositive2891788 - 2891858Not Available
elongation factor tuDDQ68_RS12915Not AvailableNegative2891977 - 289316743296.3
Trna-thrNot AvailableNot AvailablePositive2893327 - 2893398Not Available

Displaying genes 2661 – 2670 of 4590 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.