Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Hymenobacteraceae
Genus
Hymenobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Hymenobacteraceae |
| Genus | Hymenobacter |
| Species | Hymenobacter nivis |
| Strain | strain NBRC 111535 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
943307 bp
Thymine Count
941308 bp
Guanine Count
1573217 bp
Cytosine Count
1569765 bp
Genome Length
5027597 bp
Protein-coding Genes
4514 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| crispr-associated helicase cas3' | DDQ68_RS04855 | Not Available | Negative | 1123094 - 1124266 | 43916.6 |
| helix-turn-helix domain-containing protein | DDQ68_RS04860 | Not Available | Positive | 1124418 - 1124861 | 15603.1 |
| is630 family transposase | DDQ68_RS04865 | Not Available | Positive | 1124867 - 1125565 | 26797.8 |
| transposase | DDQ68_RS04870 | Not Available | Positive | 1125700 - 1126812 | 41779.2 |
| crispr-associated endonuclease cas3'' | DDQ68_RS04875 | Not Available | Negative | 1126796 - 1127674 | 31724.4 |
| hypothetical protein | DDQ68_RS04880 | Not Available | Negative | 1127671 - 1128234 | 20862.4 |
| crispr-associated endoribonuclease cas6 | DDQ68_RS04885 | Not Available | Negative | 1128252 - 1128920 | 23946.8 |
| duf6088 family protein | DDQ68_RS04890 | Not Available | Positive | 1129190 - 1129918 | 26720.8 |
| nucleotidyl transferase abieii/abigii toxin family protein | DDQ68_RS04895 | Not Available | Positive | 1129903 - 1130892 | 36073.1 |
| recombinase family protein | DDQ68_RS04900 | Not Available | Negative | 1130894 - 1131187 | 10383.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
