Paracidovorax avenae strain MD5

Gram-negativeBacilliNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Paracidovorax

Description

Paracidovorax avenae strain MD5 is a Gram-negative bacterium characterized by its bacilli shape and aerobic oxygen requirement. This strain does not exhibit mobility and possesses flagella, which likely play a role in its life cycle despite the lack of movement. Paracidovorax avenae is classified as mesophilic, indicating that it thrives in moderate temperature ranges conducive to its growth. The strain is known to have a single replicon, which is typical for many bacterial species and suggests a streamlined genomic organization. Paracidovorax avenae strain MD5 engages in a free-living biotic relationship, indicating that it does not rely on a host for survival and can exist independently in various environments. Significantly, this bacterium is associated with the bacterial brown stripe of rice, a disease that can impact rice crops and agricultural productivity. This relationship highlights its ecological role, potentially affecting rice cultivation and food supply chains. Understanding Paracidovorax avenae strain MD5's traits may provide insights into managing the bacterial brown stripe disease, emphasizing the need for further research into its biology and interactions within agricultural ecosystems. The strain is cataloged under accession number NZ_CP028295.1, which can serve as a reference for scientific studies and applications related to this organism.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusParacidovorax
SpeciesParacidovorax avenae
Strainstrain MD5

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Paracidovorax avenae strain MD5
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatNot Available
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paracidovorax avenae strain MD5 chromosome.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aminoacyl-trna hydrolaseC8246_RS22090Not AvailableNegative4899819 - 490046023020.8
50s ribosomal protein l25/general stress protein ctcC8246_RS22095Not AvailableNegative4900589 - 490122122886.7
ribose-phosphate pyrophosphokinaseC8246_RS22100Not AvailableNegative4901387 - 490234634573.0
Trna-glnNot AvailableNot AvailablePositive4902391 - 4902467Not Available
4-(cytidine 5'-diphospho)-2-c-methyl-d-erythritol kinaseC8246_RS22110Not AvailableNegative4902499 - 490335630776.9
lipoprotein insertase outer membrane protein lolbC8246_RS22115Not AvailableNegative4903365 - 490388918111.8
tetratricopeptide repeat proteinC8246_RS22120Not AvailableNegative4903886 - 490569466087.0
bifunctional dna-formamidopyrimidine glycosylase/dna-(apurinic or apyrimidinic site) lyaseC8246_RS22125Not AvailablePositive4905724 - 490653929520.1
dynamin family proteinC8246_RS22130Not AvailablePositive4906626 - 490858772710.3
hypothetical proteinC8246_RS22135Not AvailablePositive4908584 - 490965940462.5

Displaying genes 4481 – 4490 of 5103 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Bacterial brown stripe of riceCausesPMC11448091
Red stripeCausesPMC9939834
Bacterial blightCausesPMC9939834
Red/brown stripe diseasesCausesPMC9939834

Displaying health effects 1 – 4 of 4 in total