Paracidovorax avenae strain MD5

Gram-negativeBacilliNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Paracidovorax

Description

Paracidovorax avenae strain MD5 is a Gram-negative bacterium characterized by its bacilli shape and aerobic oxygen requirement. This strain does not exhibit mobility and possesses flagella, which likely play a role in its life cycle despite the lack of movement. Paracidovorax avenae is classified as mesophilic, indicating that it thrives in moderate temperature ranges conducive to its growth. The strain is known to have a single replicon, which is typical for many bacterial species and suggests a streamlined genomic organization. Paracidovorax avenae strain MD5 engages in a free-living biotic relationship, indicating that it does not rely on a host for survival and can exist independently in various environments. Significantly, this bacterium is associated with the bacterial brown stripe of rice, a disease that can impact rice crops and agricultural productivity. This relationship highlights its ecological role, potentially affecting rice cultivation and food supply chains. Understanding Paracidovorax avenae strain MD5's traits may provide insights into managing the bacterial brown stripe disease, emphasizing the need for further research into its biology and interactions within agricultural ecosystems. The strain is cataloged under accession number NZ_CP028295.1, which can serve as a reference for scientific studies and applications related to this organism.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusParacidovorax
SpeciesParacidovorax avenae
Strainstrain MD5

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Paracidovorax avenae strain MD5
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatNot Available
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paracidovorax avenae strain MD5 chromosome.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinC8246_RS16225Not AvailableNegative3576609 - 357759735415.0
membrane proteinC8246_RS16230Not AvailableNegative3577638 - 357814119126.0
peptide deformylaseC8246_RS16235Not AvailableNegative3578138 - 357864718825.9
lysm peptidoglycan-binding domain-containing proteinC8246_RS16240Not AvailablePositive3578828 - 358008145206.1
dna-processing protein dpraC8246_RS16245Not AvailablePositive3580285 - 358149641452.9
n-acetyl-gamma-glutamyl-phosphate reductaseC8246_RS16250Not AvailableNegative3581536 - 358246833150.1
adp-forming succinate--coa ligase subunit betaC8246_RS16255Not AvailablePositive3582639 - 358379941000.9
succinate--coa ligase subunit alphaC8246_RS16260Not AvailablePositive3583815 - 358471131155.0
terc family proteinC8246_RS16265Not AvailablePositive3584878 - 358556423920.8
stp1/irep family pp2c-type ser/thr phosphataseC8246_RS16270Not AvailablePositive3585761 - 358657028909.0

Displaying genes 3301 – 3310 of 5103 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Bacterial brown stripe of riceCausesPMC11448091
Red stripeCausesPMC9939834
Bacterial blightCausesPMC9939834
Red/brown stripe diseasesCausesPMC9939834

Displaying health effects 1 – 4 of 4 in total