Paracidovorax avenae strain MD5

Gram-negativeBacilliNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Paracidovorax

Description

Paracidovorax avenae strain MD5 is a Gram-negative bacterium characterized by its bacilli shape and aerobic oxygen requirement. This strain does not exhibit mobility and possesses flagella, which likely play a role in its life cycle despite the lack of movement. Paracidovorax avenae is classified as mesophilic, indicating that it thrives in moderate temperature ranges conducive to its growth. The strain is known to have a single replicon, which is typical for many bacterial species and suggests a streamlined genomic organization. Paracidovorax avenae strain MD5 engages in a free-living biotic relationship, indicating that it does not rely on a host for survival and can exist independently in various environments. Significantly, this bacterium is associated with the bacterial brown stripe of rice, a disease that can impact rice crops and agricultural productivity. This relationship highlights its ecological role, potentially affecting rice cultivation and food supply chains. Understanding Paracidovorax avenae strain MD5's traits may provide insights into managing the bacterial brown stripe disease, emphasizing the need for further research into its biology and interactions within agricultural ecosystems. The strain is cataloged under accession number NZ_CP028295.1, which can serve as a reference for scientific studies and applications related to this organism.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusParacidovorax
SpeciesParacidovorax avenae
Strainstrain MD5

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Paracidovorax avenae strain MD5
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatNot Available
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paracidovorax avenae strain MD5 chromosome.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
fumarate hydrataseC8246_RS07055Not AvailablePositive1562240 - 156379956090.7
glutamate racemaseC8246_RS07060Not AvailablePositive1563801 - 156466730029.1
aldehyde dehydrogenase iron-sulfur subunit paoaC8246_RS07065Not AvailablePositive1564800 - 156542921583.7
fad binding domain-containing proteinC8246_RS07070Not AvailablePositive1565433 - 156638333203.0
aldehyde oxidoreductase molybdenum-binding subunit paocC8246_RS07075Not AvailablePositive1566389 - 156864179341.0
m48 family metallopeptidaseC8246_RS07080Not AvailableNegative1568652 - 156915519264.2
duf6806 family proteinC8246_RS07085Not AvailableNegative1569282 - 156991423182.9
tyrosine-type recombinase/integraseC8246_RS07090Not AvailablePositive1570164 - 157136645126.4
type ii toxin-antitoxin system rele/pare family toxinC8246_RS07095Not AvailablePositive1571501 - 157188414205.1
helix-turn-helix domain-containing proteinC8246_RS07100Not AvailablePositive1571868 - 157217011003.4

Displaying genes 1441 – 1450 of 5103 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Bacterial brown stripe of riceCausesPMC11448091
Red stripeCausesPMC9939834
Bacterial blightCausesPMC9939834
Red/brown stripe diseasesCausesPMC9939834

Displaying health effects 1 – 4 of 4 in total