Variovorax sp. PMC12

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. PMC12 is a rod-shaped bacterium characterized by its single replicon. This trait indicates that it possesses a single circular chromosome, which is a common feature among many bacteria. The classification of Variovorax falls within a genus known for its versatility in various environments, often associated with soil and water ecosystems. The accession number NZ_CP027773.1 corresponds to the genomic sequence of Variovorax sp. PMC12, providing a resource for researchers interested in its genetic makeup and potential applications. Variovorax species are recognized for their ability to degrade a range of organic compounds, which can play a significant role in bioremediation efforts. The rod shape of this bacterium is typical for many members of the Betaproteobacteria class, which may suggest specific adaptive advantages in nutrient acquisition and motility in its habitat. Understanding the characteristics and genetic information of Variovorax sp. PMC12 can provide insights into its ecological roles, particularly in biogeochemical cycles. Its potential for breaking down pollutants positions it as a candidate for environmental cleanup strategies. Thus, studying this bacterium could enhance our knowledge of microbial diversity and its applications in sustainable practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. PMC12
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. PMC12 chromosome 1, complete sequence.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

5395 genes

Non-Coding Genes

179 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
outer membrane protein assembly factor bamdC4F17_RS03005Not AvailableNegative669594 - 67040030088.6
rlua family pseudouridine synthaseC4F17_RS03010Not AvailablePositive670472 - 67144935385.6
smc-scp complex subunit scpbC4F17_RS03015Not AvailablePositive671580 - 67238329129.1
pseudouridine synthaseC4F17_RS03020Not AvailablePositive672380 - 67417364246.4
nucleoside-diphosphate kinaseC4F17_RS03025Not AvailablePositive674327 - 67475215235.3
23s rrna (adenine(2503)-c(2))-methyltransferase rlmnC4F17_RS03030Not AvailablePositive674774 - 67592242470.2
type iv pilus biogenesis/stability protein pilwC4F17_RS03035Not AvailablePositive675927 - 67678131493.0
helix-turn-helix domain-containing proteinC4F17_RS03040Not AvailablePositive676774 - 67774232362.7
flavodoxin-dependent (e)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthaseC4F17_RS03045Not AvailablePositive677739 - 67901045621.9
histidine--trna ligaseC4F17_RS03050Not AvailablePositive679027 - 68033748032.7

Displaying genes 771 – 780 of 5573 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.