Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. PMC12 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
5395 genes
Non-Coding Genes
179 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| outer membrane protein assembly factor bamd | C4F17_RS03005 | Not Available | Negative | 669594 - 670400 | 30088.6 |
| rlua family pseudouridine synthase | C4F17_RS03010 | Not Available | Positive | 670472 - 671449 | 35385.6 |
| smc-scp complex subunit scpb | C4F17_RS03015 | Not Available | Positive | 671580 - 672383 | 29129.1 |
| pseudouridine synthase | C4F17_RS03020 | Not Available | Positive | 672380 - 674173 | 64246.4 |
| nucleoside-diphosphate kinase | C4F17_RS03025 | Not Available | Positive | 674327 - 674752 | 15235.3 |
| 23s rrna (adenine(2503)-c(2))-methyltransferase rlmn | C4F17_RS03030 | Not Available | Positive | 674774 - 675922 | 42470.2 |
| type iv pilus biogenesis/stability protein pilw | C4F17_RS03035 | Not Available | Positive | 675927 - 676781 | 31493.0 |
| helix-turn-helix domain-containing protein | C4F17_RS03040 | Not Available | Positive | 676774 - 677742 | 32362.7 |
| flavodoxin-dependent (e)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase | C4F17_RS03045 | Not Available | Positive | 677739 - 679010 | 45621.9 |
| histidine--trna ligase | C4F17_RS03050 | Not Available | Positive | 679027 - 680337 | 48032.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
