Variovorax sp. PMC12

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. PMC12 is a rod-shaped bacterium characterized by its single replicon. This trait indicates that it possesses a single circular chromosome, which is a common feature among many bacteria. The classification of Variovorax falls within a genus known for its versatility in various environments, often associated with soil and water ecosystems. The accession number NZ_CP027773.1 corresponds to the genomic sequence of Variovorax sp. PMC12, providing a resource for researchers interested in its genetic makeup and potential applications. Variovorax species are recognized for their ability to degrade a range of organic compounds, which can play a significant role in bioremediation efforts. The rod shape of this bacterium is typical for many members of the Betaproteobacteria class, which may suggest specific adaptive advantages in nutrient acquisition and motility in its habitat. Understanding the characteristics and genetic information of Variovorax sp. PMC12 can provide insights into its ecological roles, particularly in biogeochemical cycles. Its potential for breaking down pollutants positions it as a candidate for environmental cleanup strategies. Thus, studying this bacterium could enhance our knowledge of microbial diversity and its applications in sustainable practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. PMC12
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. PMC12 chromosome 1, complete sequence.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

5395 genes

Non-Coding Genes

179 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
polyhydroxyalkanoate depolymeraseC4F17_RS02800Not AvailableNegative621562 - 62300153649.0
amino acid aminotransferaseC4F17_RS02805Not AvailableNegative623160 - 62435642608.3
excinuclease abc subunit uvrbC4F17_RS02810Not AvailablePositive624462 - 62657079557.4
fe-s cluster assembly transcriptional regulator iscrC4F17_RS02815Not AvailablePositive626813 - 62734919304.4
iscs subfamily cysteine desulfuraseC4F17_RS02820Not AvailablePositive627450 - 62867045194.3
fe-s cluster assembly scaffold iscuC4F17_RS02825Not AvailablePositive628721 - 62914014592.3
iron-sulfur cluster assembly protein iscaC4F17_RS02830Not AvailablePositive629142 - 62946511766.1
fe-s protein assembly co-chaperone hscbC4F17_RS02835Not AvailablePositive629529 - 63004719566.1
fe-s protein assembly chaperone hscaC4F17_RS02840Not AvailablePositive630139 - 63200465539.9
isc system 2fe-2s type ferredoxinC4F17_RS02845Not AvailablePositive632014 - 63235212385.5

Displaying genes 731 – 740 of 5573 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.