Variovorax sp. PMC12

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. PMC12 is a rod-shaped bacterium characterized by its single replicon. This trait indicates that it possesses a single circular chromosome, which is a common feature among many bacteria. The classification of Variovorax falls within a genus known for its versatility in various environments, often associated with soil and water ecosystems. The accession number NZ_CP027773.1 corresponds to the genomic sequence of Variovorax sp. PMC12, providing a resource for researchers interested in its genetic makeup and potential applications. Variovorax species are recognized for their ability to degrade a range of organic compounds, which can play a significant role in bioremediation efforts. The rod shape of this bacterium is typical for many members of the Betaproteobacteria class, which may suggest specific adaptive advantages in nutrient acquisition and motility in its habitat. Understanding the characteristics and genetic information of Variovorax sp. PMC12 can provide insights into its ecological roles, particularly in biogeochemical cycles. Its potential for breaking down pollutants positions it as a candidate for environmental cleanup strategies. Thus, studying this bacterium could enhance our knowledge of microbial diversity and its applications in sustainable practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. PMC12
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. PMC12 chromosome 1, complete sequence.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

5395 genes

Non-Coding Genes

179 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
atp-binding cassette domain-containing proteinC4F17_RS01505Not AvailablePositive336470 - 33726728636.3
rok family transcriptional regulatorC4F17_RS01510Not AvailablePositive337260 - 33848043498.4
duf6194 family proteinC4F17_RS01515Not AvailableNegative338477 - 33887514581.4
tripartite tricarboxylate transporter substrate binding proteinC4F17_RS01520Not AvailableNegative338895 - 33991135090.2
sensor histidine kinaseC4F17_RS01525Not AvailableNegative339930 - 34134250738.0
response regulatorC4F17_RS01530Not AvailableNegative341349 - 34201424747.8
bug family tripartite tricarboxylate transporter substrate binding proteinC4F17_RS01535Not AvailableNegative342040 - 34304735602.0
tetratricopeptide repeat proteinC4F17_RS01540Not AvailablePositive343201 - 34567588596.4
iclr family transcriptional regulator c-terminal domain-containing proteinC4F17_RS01545Not AvailableNegative345689 - 34647428790.8
shikimate dehydrogenase family proteinC4F17_RS01550Not AvailablePositive346674 - 34759732775.7

Displaying genes 471 – 480 of 5573 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.