Variovorax sp. PMC12

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. PMC12 is a rod-shaped bacterium characterized by its single replicon. This trait indicates that it possesses a single circular chromosome, which is a common feature among many bacteria. The classification of Variovorax falls within a genus known for its versatility in various environments, often associated with soil and water ecosystems. The accession number NZ_CP027773.1 corresponds to the genomic sequence of Variovorax sp. PMC12, providing a resource for researchers interested in its genetic makeup and potential applications. Variovorax species are recognized for their ability to degrade a range of organic compounds, which can play a significant role in bioremediation efforts. The rod shape of this bacterium is typical for many members of the Betaproteobacteria class, which may suggest specific adaptive advantages in nutrient acquisition and motility in its habitat. Understanding the characteristics and genetic information of Variovorax sp. PMC12 can provide insights into its ecological roles, particularly in biogeochemical cycles. Its potential for breaking down pollutants positions it as a candidate for environmental cleanup strategies. Thus, studying this bacterium could enhance our knowledge of microbial diversity and its applications in sustainable practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. PMC12
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. PMC12 chromosome 1, complete sequence.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

5395 genes

Non-Coding Genes

179 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tripartite tricarboxylate transporter substrate binding proteinC4F17_RS00220Not AvailablePositive45677 - 4664232770.1
hpp family proteinC4F17_RS00225Not AvailableNegative46734 - 4786140582.5
multidrug effflux mfs transporterC4F17_RS00230Not AvailableNegative47881 - 4911644646.5
rna polymerase sigma factor rpodC4F17_RS00235Not AvailableNegative49219 - 5140281510.5
hypothetical proteinC4F17_RS33265Not AvailablePositive51395 - 5172411452.4
dna primaseC4F17_RS00240Not AvailableNegative51848 - 5386974001.9
yihy/virulence factor brkb family proteinC4F17_RS00245Not AvailablePositive53952 - 5489934424.8
3-hydroxyacyl-coa dehydrogenaseC4F17_RS00250Not AvailableNegative54847 - 5560525760.4
phasin family proteinC4F17_RS00255Not AvailableNegative55737 - 5628818823.1
histone deacetylaseC4F17_RS00260Not AvailablePositive56471 - 5739733970.3

Displaying genes 211 – 220 of 5573 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.