Variovorax sp. PMC12

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. PMC12 is a rod-shaped bacterium characterized by its single replicon. This trait indicates that it possesses a single circular chromosome, which is a common feature among many bacteria. The classification of Variovorax falls within a genus known for its versatility in various environments, often associated with soil and water ecosystems. The accession number NZ_CP027773.1 corresponds to the genomic sequence of Variovorax sp. PMC12, providing a resource for researchers interested in its genetic makeup and potential applications. Variovorax species are recognized for their ability to degrade a range of organic compounds, which can play a significant role in bioremediation efforts. The rod shape of this bacterium is typical for many members of the Betaproteobacteria class, which may suggest specific adaptive advantages in nutrient acquisition and motility in its habitat. Understanding the characteristics and genetic information of Variovorax sp. PMC12 can provide insights into its ecological roles, particularly in biogeochemical cycles. Its potential for breaking down pollutants positions it as a candidate for environmental cleanup strategies. Thus, studying this bacterium could enhance our knowledge of microbial diversity and its applications in sustainable practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. PMC12
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. PMC12 chromosome 1, complete sequence.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

5395 genes

Non-Coding Genes

179 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sdr family oxidoreductaseC4F17_RS04605Not AvailablePositive1000915 - 100171228062.8
paai family thioesteraseC4F17_RS04610Not AvailablePositive1001721 - 100218516792.0
nadp-dependent oxidoreductaseC4F17_RS04615Not AvailablePositive1002215 - 100323136041.7
isovaleryl-coa dehydrogenaseC4F17_RS04620Not AvailablePositive1003263 - 100490358883.6
glutathione s-transferase family proteinC4F17_RS04625Not AvailablePositive1004954 - 100589234464.3
sdr family oxidoreductaseC4F17_RS04630Not AvailablePositive1005994 - 100689932172.6
fmn-dependent nadh-azoreductaseC4F17_RS04635Not AvailableNegative1006934 - 100760524221.9
lysr substrate-binding domain-containing proteinC4F17_RS04640Not AvailablePositive1007739 - 100864432218.0
manganese efflux pump mntpC4F17_RS04645Not AvailablePositive1009114 - 100968319773.5
hypothetical proteinC4F17_RS32670Not AvailablePositive1009858 - 10100617445.92

Displaying genes 1091 – 1100 of 5573 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.