Pseudomonas synxantha strain 30B

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas synxantha strain 30B is a soil bacterium primarily found in the rhizosphere, which is the region of soil surrounding plant roots. This strain has been characterized by a single replicon, indicating a streamlined genetic structure. It interacts with various plant hosts, including Triticum aestivum (wheat), Hordeum vulgare (barley), and members of the Brassicaceae family, which encompasses species like mustard and cabbage. The presence of Pseudomonas synxantha in the rhizosphere highlights its potential role in plant health and growth. Bacteria in this environment can influence nutrient availability, promote plant resilience against pathogens, and enhance overall soil health through various mechanisms. The specific interactions of strain 30B with its host plants could involve the production of plant growth-promoting substances, thereby contributing to improved plant development. The accession number for this strain, NZ_CP027754.1, allows for further genomic studies and characterization of its traits, which could provide insights into its ecological role and applications in agriculture. Understanding the behavior of Pseudomonas synxantha in the rhizosphere can help in developing sustainable agricultural practices, particularly in leveraging beneficial microorganisms to support crop growth and health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas synxantha
Strainstrain 30B

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas synxantha strain 30B
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrhizosphere; rhizospheres
Biotic relationshipNot Available
Host(s)Triticum aestivum, Hordeum vulgare, Brassicaceae
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas synxantha strain 30B chromosome, complete genome.

Gene Summary

Adenine Count

1359626 bp

Thymine Count

1369747 bp

Guanine Count

2024267 bp

Cytosine Count

2022631 bp

Genome Length

6776271 bp

Protein-coding Genes

5918 genes

Non-Coding Genes

325 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
efflux rnd transporter periplasmic adaptor subunitC4K03_RS01170Not AvailablePositive274895 - 27597737642.3
efflux rnd transporter periplasmic adaptor subunitC4K03_RS01175Not AvailablePositive275974 - 27704438212.6
efflux rnd transporter permease subunitC4K03_RS01180Not AvailablePositive277041 - 280106112433.0
glycoside hydrolaseC4K03_RS01185Not AvailablePositive280319 - 28250881360.7
class i sam-dependent methyltransferaseC4K03_RS01190Not AvailableNegative282618 - 28324423427.6
methionine abc transporter permeaseC4K03_RS01195Not AvailableNegative283286 - 28393023063.1
type ii toxin-antitoxin system rele/pare family toxinC4K03_RS01200Not AvailableNegative283920 - 28503439732.3
metq/nlpa family abc transporter substrate-binding proteinC4K03_RS01205Not AvailableNegative285031 - 28584629473.6
llm class flavin-dependent oxidoreductaseC4K03_RS01210Not AvailableNegative285990 - 28734250717.8
sfnb family sulfur acquisition oxidoreductaseC4K03_RS01215Not AvailableNegative287342 - 28853543156.7

Displaying genes 541 – 550 of 6243 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.