Pseudomonas synxantha strain 30B

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas synxantha strain 30B is a soil bacterium primarily found in the rhizosphere, which is the region of soil surrounding plant roots. This strain has been characterized by a single replicon, indicating a streamlined genetic structure. It interacts with various plant hosts, including Triticum aestivum (wheat), Hordeum vulgare (barley), and members of the Brassicaceae family, which encompasses species like mustard and cabbage. The presence of Pseudomonas synxantha in the rhizosphere highlights its potential role in plant health and growth. Bacteria in this environment can influence nutrient availability, promote plant resilience against pathogens, and enhance overall soil health through various mechanisms. The specific interactions of strain 30B with its host plants could involve the production of plant growth-promoting substances, thereby contributing to improved plant development. The accession number for this strain, NZ_CP027754.1, allows for further genomic studies and characterization of its traits, which could provide insights into its ecological role and applications in agriculture. Understanding the behavior of Pseudomonas synxantha in the rhizosphere can help in developing sustainable agricultural practices, particularly in leveraging beneficial microorganisms to support crop growth and health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas synxantha
Strainstrain 30B

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas synxantha strain 30B
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrhizosphere; rhizospheres
Biotic relationshipNot Available
Host(s)Triticum aestivum, Hordeum vulgare, Brassicaceae
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas synxantha strain 30B chromosome, complete genome.

Gene Summary

Adenine Count

1359626 bp

Thymine Count

1369747 bp

Guanine Count

2024267 bp

Cytosine Count

2022631 bp

Genome Length

6776271 bp

Protein-coding Genes

5918 genes

Non-Coding Genes

325 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lapa family giant adhesinC4K03_RS00710Not AvailableNegative153434 - 169867554066.0
tolc family outer membrane proteinC4K03_RS00715Not AvailablePositive170206 - 17156150157.9
type i secretion system permease/atpaseC4K03_RS00720Not AvailablePositive171602 - 17375878608.7
hlyd family type i secretion periplasmic adaptor subunitC4K03_RS00725Not AvailablePositive173748 - 17511250505.0
taud/tfda dioxygenase family proteinC4K03_RS00730Not AvailablePositive175328 - 17620032774.9
lysr family transcriptional regulatorC4K03_RS00735Not AvailablePositive176261 - 17718134056.4
mfs transporterC4K03_RS00740Not AvailablePositive177408 - 17894355271.3
hlyd family secretion proteinC4K03_RS00745Not AvailablePositive178959 - 18001737374.8
efflux transporter outer membrane subunitC4K03_RS00750Not AvailablePositive180014 - 18145652830.1
type ii toxin-antitoxin system hipa family toxinC4K03_RS00755Not AvailableNegative181494 - 18275045605.4

Displaying genes 451 – 460 of 6243 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.