Pseudomonas synxantha strain 30B

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas synxantha strain 30B is a soil bacterium primarily found in the rhizosphere, which is the region of soil surrounding plant roots. This strain has been characterized by a single replicon, indicating a streamlined genetic structure. It interacts with various plant hosts, including Triticum aestivum (wheat), Hordeum vulgare (barley), and members of the Brassicaceae family, which encompasses species like mustard and cabbage. The presence of Pseudomonas synxantha in the rhizosphere highlights its potential role in plant health and growth. Bacteria in this environment can influence nutrient availability, promote plant resilience against pathogens, and enhance overall soil health through various mechanisms. The specific interactions of strain 30B with its host plants could involve the production of plant growth-promoting substances, thereby contributing to improved plant development. The accession number for this strain, NZ_CP027754.1, allows for further genomic studies and characterization of its traits, which could provide insights into its ecological role and applications in agriculture. Understanding the behavior of Pseudomonas synxantha in the rhizosphere can help in developing sustainable agricultural practices, particularly in leveraging beneficial microorganisms to support crop growth and health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas synxantha
Strainstrain 30B

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas synxantha strain 30B
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrhizosphere; rhizospheres
Biotic relationshipNot Available
Host(s)Triticum aestivum, Hordeum vulgare, Brassicaceae
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas synxantha strain 30B chromosome, complete genome.

Gene Summary

Adenine Count

1359626 bp

Thymine Count

1369747 bp

Guanine Count

2024267 bp

Cytosine Count

2022631 bp

Genome Length

6776271 bp

Protein-coding Genes

5918 genes

Non-Coding Genes

325 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type iii secretion system export apparatus subunit sctrC4K03_RS03630Not AvailablePositive828654 - 82931023844.5
type iii secretion system export apparatus subunit sctsC4K03_RS03635Not AvailablePositive829318 - 8295819429.3
type iii secretion system export apparatus subunit scttC4K03_RS03640Not AvailablePositive829592 - 83038028219.8
type iii secretion system export apparatus subunit sctuC4K03_RS03645Not AvailablePositive830377 - 83147441163.3
transcriptional regulatorC4K03_RS03650Not AvailableNegative831475 - 83184013313.2
hrpt family type iii secretion system proteinC4K03_RS03655Not AvailableNegative831837 - 8320407385.98
type iii secretion system outer membrane ring subunit sctcC4K03_RS03660Not AvailableNegative832037 - 83417579601.5
type iii secretion system chaperoneC4K03_RS03665Not AvailableNegative834190 - 83457914521.5
hypothetical proteinC4K03_RS03670Not AvailableNegative834581 - 8347998308.78
type iii secretion system stator protein sctlC4K03_RS03675Not AvailableNegative834914 - 83548621474.7

Displaying genes 1021 – 1030 of 6243 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.