Pseudomonas synxantha strain 30B

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas synxantha strain 30B is a soil bacterium primarily found in the rhizosphere, which is the region of soil surrounding plant roots. This strain has been characterized by a single replicon, indicating a streamlined genetic structure. It interacts with various plant hosts, including Triticum aestivum (wheat), Hordeum vulgare (barley), and members of the Brassicaceae family, which encompasses species like mustard and cabbage. The presence of Pseudomonas synxantha in the rhizosphere highlights its potential role in plant health and growth. Bacteria in this environment can influence nutrient availability, promote plant resilience against pathogens, and enhance overall soil health through various mechanisms. The specific interactions of strain 30B with its host plants could involve the production of plant growth-promoting substances, thereby contributing to improved plant development. The accession number for this strain, NZ_CP027754.1, allows for further genomic studies and characterization of its traits, which could provide insights into its ecological role and applications in agriculture. Understanding the behavior of Pseudomonas synxantha in the rhizosphere can help in developing sustainable agricultural practices, particularly in leveraging beneficial microorganisms to support crop growth and health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas synxantha
Strainstrain 30B

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas synxantha strain 30B
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrhizosphere; rhizospheres
Biotic relationshipNot Available
Host(s)Triticum aestivum, Hordeum vulgare, Brassicaceae
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas synxantha strain 30B chromosome, complete genome.

Gene Summary

Adenine Count

1359626 bp

Thymine Count

1369747 bp

Guanine Count

2024267 bp

Cytosine Count

2022631 bp

Genome Length

6776271 bp

Protein-coding Genes

5918 genes

Non-Coding Genes

325 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
mfs transporterC4K03_RS03475Not AvailablePositive796848 - 79813746340.2
gluconate:h+ symporterC4K03_RS03480Not AvailableNegative798141 - 79951146975.8
type ii toxin-antitoxin system rele/pare family toxinC4K03_RS32390Not AvailablePositive799682 - 7997773565.97
tolc family proteinC4K03_RS03490Not AvailablePositive799887 - 80110744124.3
efflux rnd transporter periplasmic adaptor subunitC4K03_RS03495Not AvailablePositive801128 - 80223139592.3
cusa/czca family heavy metal efflux rnd transporterC4K03_RS03500Not AvailablePositive802249 - 805383112840.0
heavy metal sensor histidine kinaseC4K03_RS03505Not AvailableNegative805450 - 80690452965.2
heavy metal response regulator transcription factorC4K03_RS03510Not AvailableNegative806901 - 80757525737.2
oprd family porinC4K03_RS03515Not AvailableNegative807912 - 80923748358.5
duf2790 domain-containing proteinC4K03_RS03520Not AvailablePositive809465 - 80979712014.7

Displaying genes 991 – 1000 of 6243 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.