Pseudomonas sp. R4-39-08

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. R4-39-08 is characterized by having a single replicon, which indicates a streamlined genomic structure that could facilitate efficient replication and stability. The organism is cataloged under the accession number NZ_CP027733.1, providing a reference point for its genetic information within biological databases. This organism likely exhibits traits common to the Pseudomonas genus, which is known for its metabolic versatility and ability to thrive in diverse environments. Pseudomonas species are often associated with soil and water ecosystems, where they play a crucial role in nutrient cycling and organic matter degradation. The presence of only one replicon may suggest that Pseudomonas sp. R4-39-08 has evolved to optimize its genomic efficiency, which can be advantageous in competitive environments. This trait could also imply that it possesses a streamlined set of genes that contribute to its adaptability and survival in various ecological niches. In summary, the genomic structure of Pseudomonas sp. R4-39-08, defined by its single replicon, may enhance its ecological fitness, allowing it to effectively participate in biogeochemical processes. This could provide insights into the ecological roles of Pseudomonas species in their natural habitats, emphasizing their importance in maintaining ecosystem health and resilience.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. R4-39-08
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. R4-39-08
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. R4-39-08 chromosome, complete genome.

Gene Summary

Adenine Count

1158249 bp

Thymine Count

1171742 bp

Guanine Count

1777396 bp

Cytosine Count

1774825 bp

Genome Length

5882212 bp

Protein-coding Genes

5215 genes

Non-Coding Genes

228 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lipopolysaccharide heptosyltransferase iiC4J88_RS02320Not AvailablePositive559151 - 56018538216.4
lipopolysaccharide heptosyltransferase iC4J88_RS02325Not AvailablePositive560187 - 56124839134.5
glycosyltransferase family 4 proteinC4J88_RS02330Not AvailablePositive561248 - 56237242621.4
lipopolysaccharide core heptose(i) kinase rfapC4J88_RS02335Not AvailablePositive562369 - 56317530446.3
lipopolysaccharide kinase inaa family proteinC4J88_RS02340Not AvailablePositive563175 - 56390928728.4
lipopolysaccharide kinase inaa family proteinC4J88_RS02345Not AvailablePositive563906 - 56465828789.2
lipopolysaccharide kinase inaa family proteinC4J88_RS02350Not AvailablePositive564658 - 56610954058.4
tonb-dependent receptor family proteinC4J88_RS02355Not AvailableNegative566237 - 56831575751.9
ycek/yidq family lipoproteinC4J88_RS02360Not AvailablePositive568523 - 56885811892.6
carbamoyltransferaseC4J88_RS02365Not AvailablePositive568991 - 57074865552.8

Displaying genes 641 – 650 of 5443 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.