Pseudomonas sp. R4-39-08

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. R4-39-08 is characterized by having a single replicon, which indicates a streamlined genomic structure that could facilitate efficient replication and stability. The organism is cataloged under the accession number NZ_CP027733.1, providing a reference point for its genetic information within biological databases. This organism likely exhibits traits common to the Pseudomonas genus, which is known for its metabolic versatility and ability to thrive in diverse environments. Pseudomonas species are often associated with soil and water ecosystems, where they play a crucial role in nutrient cycling and organic matter degradation. The presence of only one replicon may suggest that Pseudomonas sp. R4-39-08 has evolved to optimize its genomic efficiency, which can be advantageous in competitive environments. This trait could also imply that it possesses a streamlined set of genes that contribute to its adaptability and survival in various ecological niches. In summary, the genomic structure of Pseudomonas sp. R4-39-08, defined by its single replicon, may enhance its ecological fitness, allowing it to effectively participate in biogeochemical processes. This could provide insights into the ecological roles of Pseudomonas species in their natural habitats, emphasizing their importance in maintaining ecosystem health and resilience.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. R4-39-08
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. R4-39-08
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. R4-39-08 chromosome, complete genome.

Gene Summary

Adenine Count

1158249 bp

Thymine Count

1171742 bp

Guanine Count

1777396 bp

Cytosine Count

1774825 bp

Genome Length

5882212 bp

Protein-coding Genes

5215 genes

Non-Coding Genes

228 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
choline abc transporter atp-binding proteinC4J88_RS02070Not AvailableNegative497710 - 49888843462.0
choline abc transporter permease subunitC4J88_RS02075Not AvailableNegative498885 - 49973030296.2
choline abc transporter substrate-binding proteinC4J88_RS02080Not AvailableNegative499800 - 50074734505.4
l-serine ammonia-lyaseC4J88_RS02085Not AvailablePositive501164 - 50254049208.3
mfs transporterC4J88_RS02090Not AvailableNegative502576 - 50385045292.7
lysr family transcriptional regulatorC4J88_RS02095Not AvailablePositive503974 - 50486732274.1
type ii toxin-antitoxin system pemk/mazf family toxinC4J88_RS02100Not AvailablePositive504956 - 50534214307.7
hypothetical proteinC4J88_RS02105Not AvailableNegative505535 - 50593015004.2
rhs repeat-associated core domain-containing proteinC4J88_RS02110Not AvailableNegative505957 - 50718242781.4
3-oxoacyl-acp reductase fabgC4J88_RS02115Not AvailableNegative507182 - 50791025731.4

Displaying genes 591 – 600 of 5443 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.