Pseudomonas sp. R4-39-08

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. R4-39-08 is characterized by having a single replicon, which indicates a streamlined genomic structure that could facilitate efficient replication and stability. The organism is cataloged under the accession number NZ_CP027733.1, providing a reference point for its genetic information within biological databases. This organism likely exhibits traits common to the Pseudomonas genus, which is known for its metabolic versatility and ability to thrive in diverse environments. Pseudomonas species are often associated with soil and water ecosystems, where they play a crucial role in nutrient cycling and organic matter degradation. The presence of only one replicon may suggest that Pseudomonas sp. R4-39-08 has evolved to optimize its genomic efficiency, which can be advantageous in competitive environments. This trait could also imply that it possesses a streamlined set of genes that contribute to its adaptability and survival in various ecological niches. In summary, the genomic structure of Pseudomonas sp. R4-39-08, defined by its single replicon, may enhance its ecological fitness, allowing it to effectively participate in biogeochemical processes. This could provide insights into the ecological roles of Pseudomonas species in their natural habitats, emphasizing their importance in maintaining ecosystem health and resilience.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. R4-39-08
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. R4-39-08
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. R4-39-08 chromosome, complete genome.

Gene Summary

Adenine Count

1158249 bp

Thymine Count

1171742 bp

Guanine Count

1777396 bp

Cytosine Count

1774825 bp

Genome Length

5882212 bp

Protein-coding Genes

5215 genes

Non-Coding Genes

228 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type vi secretion system-associated fha domain protein taghC4J88_RS26700Not AvailableNegative5737117 - 573844548582.6
type vi secretion system protein tssaC4J88_RS26705Not AvailablePositive5738835 - 573985436747.2
type vi secretion system contractile sheath small subunitC4J88_RS26710Not AvailablePositive5739909 - 574041518417.2
type vi secretion system contractile sheath large subunitC4J88_RS26715Not AvailablePositive5740418 - 574191455707.5
hcp family type vi secretion system effectorC4J88_RS26720Not AvailablePositive5742063 - 574255117548.0
type vi secretion system baseplate subunit tsseC4J88_RS26725Not AvailablePositive5742630 - 574314518880.6
type vi secretion system baseplate subunit tssfC4J88_RS26730Not AvailablePositive5743142 - 574500169277.7
type vi secretion system baseplate subunit tssgC4J88_RS26735Not AvailablePositive5744965 - 574601439475.5
rhs repeat-associated core domain-containing proteinC4J88_RS26740Not AvailablePositive5746007 - 574866094246.3
type vi secretion system vgr family proteinC4J88_RS26745Not AvailablePositive5748819 - 575075972329.5

Displaying genes 5321 – 5330 of 5443 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.