Pseudomonas sp. R4-39-08

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. R4-39-08 is characterized by having a single replicon, which indicates a streamlined genomic structure that could facilitate efficient replication and stability. The organism is cataloged under the accession number NZ_CP027733.1, providing a reference point for its genetic information within biological databases. This organism likely exhibits traits common to the Pseudomonas genus, which is known for its metabolic versatility and ability to thrive in diverse environments. Pseudomonas species are often associated with soil and water ecosystems, where they play a crucial role in nutrient cycling and organic matter degradation. The presence of only one replicon may suggest that Pseudomonas sp. R4-39-08 has evolved to optimize its genomic efficiency, which can be advantageous in competitive environments. This trait could also imply that it possesses a streamlined set of genes that contribute to its adaptability and survival in various ecological niches. In summary, the genomic structure of Pseudomonas sp. R4-39-08, defined by its single replicon, may enhance its ecological fitness, allowing it to effectively participate in biogeochemical processes. This could provide insights into the ecological roles of Pseudomonas species in their natural habitats, emphasizing their importance in maintaining ecosystem health and resilience.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. R4-39-08
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. R4-39-08
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. R4-39-08 chromosome, complete genome.

Gene Summary

Adenine Count

1158249 bp

Thymine Count

1171742 bp

Guanine Count

1777396 bp

Cytosine Count

1774825 bp

Genome Length

5882212 bp

Protein-coding Genes

5215 genes

Non-Coding Genes

228 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Tail proteinC4J88_RS05690Not AvailablePositive1290371 - 129137236510.6
Putative lysozymeC4J88_RS05695Not AvailablePositive1291395 - 129195220635.7
RzC4J88_RS05700Not AvailablePositive1291940 - 129244018231.8
cina family proteinC4J88_RS05705Not AvailablePositive1292522 - 129302217621.0
Dna strand exchange and recombination protein with protease and nuclease activityC4J88_RS05710Not AvailablePositive1293106 - 129416437626.4
recombination regulator recxC4J88_RS05715Not AvailablePositive1294173 - 129464017986.6
Hypothetical proteinC4J88_RS05720Not AvailableNegative1294702 - 129581441682.7
pa3611 family quorum-sensing-regulated virulence factorC4J88_RS05725Not AvailableNegative1296099 - 129653315881.4
pp_01113C4J88_RS05730Not AvailablePositive1296712 - 1297431Not Available
response regulator transcription factor erdrC4J88_RS05735Not AvailablePositive1297683 - 129833323587.4

Displaying genes 21 – 30 of 5443 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.