Pseudomonas chlororaphis subsp. chlororaphis strain DSM 50083

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas chlororaphis subsp. chlororaphis strain DSM 50083 is a Gram-negative bacterium characterized by its rod shape. This strain possesses a single replicon, indicating a streamlined genetic structure typical of many bacteria within the Pseudomonas genus. The strain is cataloged under the accession number NZ_CP027712.1, which provides a reference for its genomic information. Pseudomonas chlororaphis subsp. chlororaphis is known for its ecological role in various environments, particularly in soil, where it can contribute to nutrient cycling and plant interactions. This strain's Gram-negative nature suggests that it possesses a complex cell wall structure, which may confer advantages in adapting to diverse environmental conditions and resisting certain antimicrobial agents. The presence of a single replicon may also indicate a stable genomic organization, which can be beneficial for the bacterium's survival and persistence in its habitat. Understanding the traits of DSM 50083 can provide insights into its potential applications in agriculture, such as its use as a biocontrol agent against plant pathogens or in promoting plant growth through beneficial interactions. Overall, Pseudomonas chlororaphis subsp. chlororaphis strain DSM 50083 exemplifies the diverse functionalities of Pseudomonas species in ecological systems, particularly in their roles as beneficial microorganisms in agricultural settings.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas chlororaphis
Strainsubsp. chlororaphis strain DSM 50083

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas chlororaphis subsp. chlororaphis strain DSM 50083
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas chlororaphis subsp. chlororaphis strain DSM 50083

Gene Summary

Adenine Count

1261669 bp

Thymine Count

1258398 bp

Guanine Count

2142216 bp

Cytosine Count

2145904 bp

Genome Length

6808187 bp

Protein-coding Genes

5995 genes

Non-Coding Genes

227 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
4-deoxy-4-formamido-l-arabinose- phosphoundecaprenol deformylaseC4K27_RS15370Not AvailableNegative3347641 - 334852532739.0
bifunctional udp-4-amino-4-deoxy-l-arabinose formyltransferase/udp-glucuronic acid oxidase arnaC4K27_RS15375Not AvailableNegative3348525 - 335053174404.6
undecaprenyl-phosphate 4-deoxy-4-formamido-l-arabinose transferaseC4K27_RS15380Not AvailableNegative3350528 - 335154737733.9
udp-4-amino-4-deoxy-l-arabinose aminotransferaseC4K27_RS15385Not AvailableNegative3351552 - 335269141579.9
substrate-binding periplasmic proteinC4K27_RS15390Not AvailablePositive3353471 - 335425329158.5
hypothetical proteinC4K27_RS15395Not AvailableNegative3354319 - 335536238980.8
abc transporter atp-binding proteinC4K27_RS15400Not AvailablePositive3355699 - 335662233512.5
abc transporter permease subunitC4K27_RS15405Not AvailablePositive3356619 - 335735327023.9
gldg family proteinC4K27_RS15410Not AvailablePositive3357364 - 335925070157.2
cupin domain-containing proteinC4K27_RS15415Not AvailablePositive3359350 - 335987419359.2

Displaying genes 3071 – 3080 of 6222 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.