Pseudomonas koreensis strain P19E3

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas koreensis strain P19E3 is a Gram-negative bacterium isolated from Korean agricultural soil, specifically within the rice rhizosphere. This organism possesses five replicons, indicating a complex genomic structure that may contribute to its adaptability and survival in diverse environments. This strain has been identified as a host for Homo sapiens, where it has been documented to cause infectious keratitis, a serious eye infection. The presence of P. koreensis in agricultural soils suggests its potential interactions with plants and soil microorganisms, which could influence the dynamics of the rhizosphere ecosystem. Furthermore, the strain is cataloged under several accessions (NZ_CP027477.1; NZ_CP027478.1; NZ_CP027479.1; NZ_CP027480.1; NZ_CP027481.1), reflecting its significance in microbial databases and facilitating further research into its genetic and pathogenic characteristics. The ecological role of Pseudomonas koreensis in the rice rhizosphere may be multifaceted, including contributions to nutrient cycling and plant health. However, its pathogenic potential in humans highlights the importance of understanding how soil-dwelling bacteria can transition to causing infections in hosts, thereby underscoring the need for careful monitoring of microbial communities in agricultural settings.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas koreensis
Strainstrain P19E3

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas koreensis strain P19E3
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatKorean agricultural soil; rice rhizosphere
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas koreensis strain P19E3 plasmid p4, complete sequence.

Gene Summary

Adenine Count

860 bp

Thymine Count

813 bp

Guanine Count

595 bp

Cytosine Count

559 bp

Genome Length

2827 bp

Protein-coding Genes

2 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
zinc-binding alcohol dehydrogenase family proteinPkP19E3_RS03450Not AvailableNegative773909 - 77492236380.9
putative quinol monooxygenasePkP19E3_RS03455Not AvailableNegative774955 - 77524810791.6
lysr family transcriptional regulatorPkP19E3_RS03460Not AvailablePositive775367 - 77629634298.4
arsr/smtb family transcription factorPkP19E3_RS03465Not AvailablePositive776613 - 77734426241.9
mfs transporterPkP19E3_RS03470Not AvailablePositive777474 - 77885350002.9
adenosine deaminasePkP19E3_RS03475Not AvailableNegative778962 - 77991536120.9
2-oxoglutarate and iron-dependent oxygenase domain-containing proteinPkP19E3_RS03480Not AvailableNegative779998 - 78096336245.9
bmp family abc transporter substrate-binding proteinPkP19E3_RS03485Not AvailableNegative781109 - 78218238999.6
calcium:proton antiporterPkP19E3_RS03490Not AvailablePositive782457 - 78354838834.8
8-oxoguanine deaminasePkP19E3_RS03495Not AvailableNegative783658 - 78501648974.7

Displaying genes 2071 – 2080 of 7148 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

71 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000686vanillateC8H7O4Chemical structure of vanillateNot available
Average167.1388Da
Monoisotopic167.0344337Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da
BASm0001845nicotinateC6H4NO2Chemical structure of nicotinateNot available
Average122.1015Da
Monoisotopic122.0242034Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da

Displaying 1–10 of 71 metabolites

Health Effects

Health ConditionRelationReference
Infectious keratitisCausesPMC7747071

Displaying health effects 1 – 1 of 1 in total