Helicobacter pylori strain FDAARGOS_300

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter pylori strain FDAARGOS_300 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and presence of flagella. This organism is adapted to a host-associated habitat, primarily colonizing the gastric mucosa of various hosts, including Homo sapiens, Gallus gallus, and other mammals and avians. It exists as single cells and is classified as free-living, despite its dependence on host environments for survival and reproduction. The strain thrives optimally at 37°C and falls within the mesophilic temperature range. It possesses a single replicon and has a double-membrane structure. The pathogenicity of H. pylori strain FDAARGOS_300 is particularly significant in humans, as it is associated with various gastrointestinal diseases and health issues. Notably, it has been linked to chronic gastric inflammation, gastric ulcers, and several forms of gastric cancer, including adenocarcinoma and mucosa-associated lymphoid tissue (MALT) lymphoma. This bacterium can also induce asymptomatic mucosal inflammatory responses and is implicated in conditions such as GERD and functional dyspepsia. The ecological insight provided by these traits indicates that H. pylori plays a crucial role in the complex interactions between host organisms and their microbiomes, particularly in the context of gastric health and disease. Its prevalence across multiple host species highlights its adaptability and significance in the study of infectious diseases and cancer biology. The accessions related to this strain, such as NZ_CP027404.1, facilitate further research into its genomic characteristics and pathogenic mechanisms.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pylori
Strainstrain FDAARGOS_300

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Helicobacter pylori strain FDAARGOS_300
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Aves
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Helicobacter pylori strain FDAARGOS_300 chromosome, complete

Gene Summary

Adenine Count

499142 bp

Thymine Count

501755 bp

Guanine Count

320685 bp

Cytosine Count

324156 bp

Genome Length

1645738 bp

Protein-coding Genes

1525 genes

Non-Coding Genes

45 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
flagellar hook assembly protein flgdCEP79_RS07950Not AvailablePositive1627870 - 162896140932.7
flagellar hook protein flgeCEP79_RS07955Not AvailablePositive1628958 - 163077567185.1
restriction endonucleaseCEP79_RS07960Not AvailablePositive1630827 - 163144924507.2
class i sam-dependent methyltransferaseCEP79_RS07965Not AvailablePositive1631418 - 163256344451.0
atp-dependent helicaseCEP79_RS07970Not AvailablePositive1632572 - 163460276718.2
hop family adhesin alpaCEP79_RS07975Not AvailablePositive1635765 - 163732756407.8
hop family adhesin alpbCEP79_RS07980Not AvailablePositive1637349 - 163893256726.6
outer membrane beta-barrel protein hofgCEP79_RS07990Not AvailableNegative1639717 - 164126158894.7
tonb-dependent receptor domain-containing proteinCEP79_RS07995Not AvailableNegative1641598 - 164404590836.1
hypothetical proteinCEP79_RS08000Not AvailableNegative1644221 - 164465216061.5

Displaying genes 1561 – 1570 of 1570 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Chronic gastric inflammationCausesPMC10226649
Gastric cancerCausesPMC10226649
Gastric ulcersCausesPMC10420633
Stomach carcinomaCausesPMC10420633
UlcersCausesPMC10420633
AdenocarcinomaCausesPMC10420633
Mucosa-associated lymphoid tissue lymphomaCausesPMC10420633
GerdCausesPMC10712878
GastritisCausesPMC10712878
Gastric cancerCausesPMC10732068

Displaying health effects 1 – 10 of 94 in total