Agrobacterium tumefaciens strain 1D1609

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium tumefaciens strain 1D1609 is a Gram-negative, rod-shaped bacterium that thrives optimally at 25.0°C. This strain, like other members of the Agrobacterium genus, is commonly found in diverse habitats, which enables it to interact with a variety of environmental factors and biological systems. As an aerobic organism, A. tumefaciens strain 1D1609 requires oxygen for its metabolic processes, positioning it within ecosystems where oxygen availability is sufficient. The capacity of this strain to inhabit multiple environments highlights its ecological versatility, which may contribute to its roles in plant-microbe interactions. Although the specific ecological functions of strain 1D1609 remain to be fully elucidated, its classification within the Agrobacterium genus suggests potential involvement in processes such as soil nutrient cycling or plant growth promotion. The adaptability of A. tumefaciens strains to various niches further underscores their significance in microbial ecology and their potential applications in biotechnology, particularly in agricultural contexts where they may influence plant health and development.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tumefaciens
Strainstrain 1D1609

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium tumefaciens strain 1D1609
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium tumefaciens strain 1D1609


Gene Summary

Adenine Count

37209 bp

Thymine Count

37648 bp

Guanine Count

46427 bp

Cytosine Count

44833 bp

Genome Length

166117 bp

Protein-coding Genes

157 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
plasmid partitioning protein repaAt1D1609_RS26435Not Available+1 - 121844552.3
plasmid partitioning protein repbAt1D1609_RS26440Not Available+1448 - 245836552.8
plasmid replication protein repcAt1D1609_RS26445Not Available+2665 - 398448420.1
age family epimerase/isomeraseAt1D1609_RS26450Not Available-3925 - 489335422.7
age family epimerase/isomeraseAt1D1609_RS30065Not Available-4884 - 519411291.4
age family epimerase/isomeraseAt1D1609_RS30070Not Available-5626 - 589810073.2
site-specific integraseAt1D1609_RS26465Not Available-6052 - 713439706.6
type ii toxin-antitoxin system vapc family toxinAt1D1609_RS26470Not Available-7136 - 753714852.9
type ii toxin-antitoxin system phd/yefm family antitoxinAt1D1609_RS26475Not Available-7537 - 77919429.92
tn3 family transposaseAt1D1609_RS26480Not Available-8094 - 11069111781.0

Displaying genes 1 – 10 of 2687 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites