Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| plasmid partitioning protein repa | At1D1609_RS26435 | Not Available | + | 1 - 1218 | 44552.3 |
| plasmid partitioning protein repb | At1D1609_RS26440 | Not Available | + | 1448 - 2458 | 36552.8 |
| plasmid replication protein repc | At1D1609_RS26445 | Not Available | + | 2665 - 3984 | 48420.1 |
| age family epimerase/isomerase | At1D1609_RS26450 | Not Available | - | 3925 - 4893 | 35422.7 |
| age family epimerase/isomerase | At1D1609_RS30065 | Not Available | - | 4884 - 5194 | 11291.4 |
| age family epimerase/isomerase | At1D1609_RS30070 | Not Available | - | 5626 - 5898 | 10073.2 |
| site-specific integrase | At1D1609_RS26465 | Not Available | - | 6052 - 7134 | 39706.6 |
| type ii toxin-antitoxin system vapc family toxin | At1D1609_RS26470 | Not Available | - | 7136 - 7537 | 14852.9 |
| type ii toxin-antitoxin system phd/yefm family antitoxin | At1D1609_RS26475 | Not Available | - | 7537 - 7791 | 9429.92 |
| tn3 family transposase | At1D1609_RS26480 | Not Available | - | 8094 - 11069 | 111781.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.


