Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbohydrate abc transporter permease | At1D1609_RS17445 | Not Available | Negative | 410142 - 411185 | 38852.4 |
| carbohydrate abc transporter permease | At1D1609_RS17450 | Not Available | Negative | 411178 - 412146 | 35752.5 |
| abc transporter substrate-binding protein | At1D1609_RS17455 | Not Available | Negative | 412204 - 413475 | 45903.3 |
| gfo/idh/moca family protein | At1D1609_RS17460 | Not Available | Negative | 413497 - 414570 | 38408.8 |
| gfo/idh/moca family protein | At1D1609_RS17465 | Not Available | Negative | 414567 - 415583 | 37375.6 |
| gfo/idh/moca family protein | At1D1609_RS17470 | Not Available | Negative | 415576 - 416628 | 36749.8 |
| gntr family transcriptional regulator | At1D1609_RS17475 | Not Available | Positive | 416732 - 417445 | 26470.7 |
| smp-30/gluconolactonase/lre family protein | At1D1609_RS17480 | Not Available | Positive | 417479 - 418399 | 33325.8 |
| hlyd family type i secretion periplasmic adaptor subunit | At1D1609_RS17485 | Not Available | Negative | 418424 - 419737 | 47986.5 |
| type i secretion system permease/atpase | At1D1609_RS17490 | Not Available | Negative | 419724 - 421571 | 65792.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


