Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf917 domain-containing protein | At1D1609_RS17395 | Not Available | Negative | 396974 - 398107 | 40066.8 |
| hydantoinase/oxoprolinase n-terminal domain-containing protein | At1D1609_RS17400 | Not Available | Negative | 398100 - 399656 | 54061.9 |
| nickel abc transporter atp-binding protein nike | At1D1609_RS17405 | Not Available | Negative | 399674 - 401320 | 60114.6 |
| abc transporter permease | At1D1609_RS17410 | Not Available | Negative | 401325 - 402206 | 32036.8 |
| abc transporter permease | At1D1609_RS17415 | Not Available | Negative | 402206 - 403234 | 37066.4 |
| helix-turn-helix transcriptional regulator | At1D1609_RS17420 | Not Available | Positive | 403371 - 405722 | 88230.0 |
| ribonuclease activity regulator rraa | At1D1609_RS17425 | Not Available | Negative | 405726 - 406436 | 25586.7 |
| nad-dependent epimerase/dehydratase family protein | At1D1609_RS17430 | Not Available | Negative | 406471 - 407268 | 29414.9 |
| l-arabinonate dehydratase | At1D1609_RS17435 | Not Available | Negative | 407278 - 409002 | 62499.2 |
| abc transporter atp-binding protein | At1D1609_RS17440 | Not Available | Negative | 409040 - 410119 | 38880.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


