Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter substrate-binding protein | At1D1609_RS17345 | Not Available | Negative | 384604 - 386148 | 56156.1 |
| serine hydrolase | At1D1609_RS17350 | Not Available | Negative | 386178 - 387020 | 30601.2 |
| abc transporter atp-binding protein | At1D1609_RS17355 | Not Available | Negative | 387034 - 388668 | 60062.0 |
| abc transporter permease | At1D1609_RS17360 | Not Available | Negative | 388665 - 389483 | 28972.4 |
| abc transporter permease | At1D1609_RS17365 | Not Available | Negative | 389480 - 390424 | 34266.3 |
| lysr family transcriptional regulator | At1D1609_RS17370 | Not Available | Negative | 390605 - 391510 | 32747.1 |
| isoaspartyl peptidase/l-asparaginase family protein | At1D1609_RS17375 | Not Available | Negative | 391616 - 392560 | 32221.8 |
| hydantoinase/oxoprolinase n-terminal domain-containing protein | At1D1609_RS17380 | Not Available | Negative | 392606 - 394144 | 53430.2 |
| duf917 domain-containing protein | At1D1609_RS17385 | Not Available | Negative | 394141 - 395217 | 38442.2 |
| abc transporter substrate-binding protein | At1D1609_RS17390 | Not Available | Negative | 395335 - 396930 | 58596.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


