Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | At1D1609_RS29775 | Not Available | Positive | 349911 - 350048 | 4744.05 |
| gfo/idh/moca family protein | At1D1609_RS17195 | Not Available | Negative | 350309 - 351442 | 40531.6 |
| sugar phosphate isomerase/epimerase family protein | At1D1609_RS17200 | Not Available | Negative | 351467 - 352231 | 27766.9 |
| abc transporter atp-binding protein | At1D1609_RS17205 | Not Available | Negative | 352289 - 353377 | 39987.7 |
| carbohydrate abc transporter permease | At1D1609_RS17210 | Not Available | Negative | 353383 - 354324 | 34592.2 |
| carbohydrate abc transporter permease | At1D1609_RS17215 | Not Available | Negative | 354317 - 355219 | 33573.9 |
| abc transporter substrate-binding protein | At1D1609_RS17220 | Not Available | Negative | 355364 - 356596 | 43318.6 |
| cpbp family intramembrane glutamic endopeptidase | At1D1609_RS17225 | Not Available | Positive | 356818 - 357540 | 25549.4 |
| mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | At1D1609_RS17230 | Not Available | Negative | 357606 - 359036 | 53026.1 |
| nadp-dependent malic enzyme | At1D1609_RS17235 | Not Available | Positive | 359434 - 361722 | 82587.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


