Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| substrate-binding domain-containing protein | At1D1609_RS17145 | Not Available | Negative | 340350 - 341363 | 37480.3 |
| abc transporter substrate-binding protein | At1D1609_RS17150 | Not Available | Positive | 341633 - 342898 | 45518.6 |
| carbohydrate abc transporter permease | At1D1609_RS17155 | Not Available | Positive | 342963 - 343937 | 35869.6 |
| carbohydrate abc transporter permease | At1D1609_RS17160 | Not Available | Positive | 343934 - 344767 | 30420.1 |
| abc transporter atp-binding protein | At1D1609_RS17165 | Not Available | Positive | 344778 - 345806 | 37582.4 |
| thua domain-containing protein | At1D1609_RS17170 | Not Available | Positive | 345864 - 346649 | 29714.1 |
| gfo/idh/moca family protein | At1D1609_RS17175 | Not Available | Positive | 346656 - 347705 | 38224.6 |
| 7-carboxy-7-deazaguanine synthase quee | At1D1609_RS17180 | Not Available | Negative | 347868 - 348623 | 27614.9 |
| 6-carboxytetrahydropterin synthase qued | At1D1609_RS17185 | Not Available | Negative | 348620 - 348976 | 13967.3 |
| 7-cyano-7-deazaguanine synthase quec | At1D1609_RS17190 | Not Available | Negative | 348976 - 349686 | 25608.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


