Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cupin domain-containing protein | At1D1609_RS17095 | Not Available | Negative | 331619 - 332167 | 20095.1 |
| aspartate aminotransferase family protein | At1D1609_RS17100 | Not Available | Positive | 332313 - 333647 | 47928.1 |
| methyl-accepting chemotaxis protein | At1D1609_RS17105 | Not Available | Positive | 333790 - 335610 | 64135.7 |
| l,d-transpeptidase | At1D1609_RS17110 | Not Available | Negative | 335705 - 336490 | 28621.3 |
| l,d-transpeptidase family protein | At1D1609_RS17115 | Not Available | Negative | 336510 - 337565 | 38193.0 |
| sdr family oxidoreductase | At1D1609_RS17120 | Not Available | Negative | 337741 - 338526 | 26940.2 |
| hypothetical protein | At1D1609_RS29770 | Not Available | Negative | 338523 - 338906 | 13337.3 |
| dna-3-methyladenine glycosylase | At1D1609_RS17130 | Not Available | Positive | 339004 - 339585 | 20934.2 |
| hypothetical protein | At1D1609_RS17135 | Not Available | Negative | 339554 - 339748 | 7006.34 |
| hypothetical protein | At1D1609_RS17140 | Not Available | Negative | 339978 - 340175 | 7323.36 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


