Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix domain-containing protein | At1D1609_RS17040 | Not Available | Negative | 318542 - 319315 | 28222.2 |
| hypothetical protein | At1D1609_RS29440 | Not Available | Negative | 319547 - 319708 | 5998.31 |
| fibrinogen-binding protein | At1D1609_RS17050 | Not Available | Positive | 320226 - 321191 | 33881.7 |
| hypothetical protein | At1D1609_RS17055 | Not Available | Positive | 321344 - 323362 | 73355.3 |
| type i secretion system permease/atpase | At1D1609_RS17060 | Not Available | Positive | 323444 - 325648 | 79113.9 |
| hlyd family type i secretion periplasmic adaptor subunit | At1D1609_RS17065 | Not Available | Positive | 325657 - 327015 | 50045.4 |
| hypothetical protein | At1D1609_RS17070 | Not Available | Positive | 327101 - 327595 | 18867.1 |
| o-antigen ligase family protein | At1D1609_RS17075 | Not Available | Negative | 327592 - 328860 | 46031.1 |
| polysaccharide biosynthesis/export family protein | At1D1609_RS17080 | Not Available | Negative | 328868 - 330124 | 45810.3 |
| sugar transferase | At1D1609_RS17085 | Not Available | Negative | 330319 - 330999 | 25317.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


