Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | At1D1609_RS29835 | Not Available | Positive | 87402 - 87572 | 6340.48 |
| hu family dna-binding protein | At1D1609_RS26875 | Not Available | Negative | 87612 - 87890 | 9694.63 |
| wgr domain-containing protein | At1D1609_RS26880 | Not Available | Negative | 88028 - 88285 | 9644.5 |
| thermonuclease family protein | At1D1609_RS26885 | Not Available | Negative | 88562 - 89020 | 16977.5 |
| ti-type conjugative transfer system protein trag | At1D1609_RS26890 | Not Available | Negative | 89017 - 90939 | 68571.5 |
| type iv conjugative transfer system coupling protein trad | At1D1609_RS26895 | Not Available | Negative | 90926 - 91141 | 7764.51 |
| conjugal transfer protein trac | At1D1609_RS26900 | Not Available | Negative | 91146 - 91442 | 10459.2 |
| ti-type conjugative transfer relaxase traa | At1D1609_RS26905 | Not Available | Positive | 91695 - 94997 | 123670.0 |
| conjugative transfer signal peptidase traf | At1D1609_RS26910 | Not Available | Positive | 94994 - 95524 | 19003.2 |
| conjugal transfer protein trab | At1D1609_RS26915 | Not Available | Positive | 95565 - 96740 | 42122.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


