Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sigma-54-dependent transcriptional regulator | At1D1609_RS16940 | Not Available | Negative | 290862 - 292226 | 49996.0 |
| sensor histidine kinase | At1D1609_RS16945 | Not Available | Negative | 292228 - 294069 | 67377.1 |
| dicarboxylate/amino acid:cation symporter | At1D1609_RS16950 | Not Available | Positive | 294306 - 295652 | 47245.0 |
| eama family transporter | At1D1609_RS16955 | Not Available | Positive | 295836 - 296273 | 15612.5 |
| aspartate aminotransferase family protein | At1D1609_RS16960 | Not Available | Negative | 296313 - 297665 | 49002.2 |
| sdr family nad(p)-dependent oxidoreductase | At1D1609_RS16965 | Not Available | Negative | 297702 - 298436 | 25930.1 |
| gnat family n-acetyltransferase | At1D1609_RS16970 | Not Available | Positive | 298671 - 300317 | 62912.7 |
| amidohydrolase | At1D1609_RS16975 | Not Available | Positive | 300378 - 301532 | 41715.6 |
| cellulose synthase | At1D1609_RS16980 | Not Available | Negative | 301572 - 303905 | 84565.5 |
| glycosyl hydrolase family 8 | At1D1609_RS16985 | Not Available | Negative | 303896 - 304951 | 37477.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


