Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | At1D1609_RS16885 | Not Available | Positive | 282214 - 282999 | 27967.1 |
| abc transporter substrate-binding protein | At1D1609_RS16890 | Not Available | Positive | 282996 - 283946 | 34902.1 |
| hydroxyethylthiazole kinase | At1D1609_RS16895 | Not Available | Positive | 283943 - 284683 | 26222.5 |
| thiamine phosphate synthase | At1D1609_RS16900 | Not Available | Positive | 284670 - 285332 | 22948.7 |
| bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | At1D1609_RS16905 | Not Available | Positive | 285329 - 286126 | 27557.2 |
| lrp/asnc family transcriptional regulator | At1D1609_RS16915 | Not Available | Negative | 286344 - 286802 | 16965.5 |
| alanine racemase | At1D1609_RS16920 | Not Available | Positive | 286930 - 288096 | 40712.0 |
| d-amino acid dehydrogenase | At1D1609_RS16925 | Not Available | Positive | 288104 - 289360 | 45195.5 |
| gntr family transcriptional regulator | At1D1609_RS16930 | Not Available | Negative | 289409 - 290119 | 25864.0 |
| ba14k family protein | At1D1609_RS16935 | Not Available | Positive | 290299 - 290775 | 17738.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


