Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | At1D1609_RS16790 | Not Available | Negative | 254103 - 254978 | 31525.7 |
| abc transporter permease | At1D1609_RS16795 | Not Available | Negative | 254978 - 255919 | 33840.7 |
| abc transporter substrate-binding protein | At1D1609_RS16800 | Not Available | Negative | 256129 - 257655 | 55692.2 |
| hypothetical protein | At1D1609_RS29435 | Not Available | Positive | 257768 - 257980 | 8238.86 |
| glycosyltransferase family 4 protein | At1D1609_RS16805 | Not Available | Positive | 258160 - 259284 | 42196.7 |
| polysaccharide biosynthesis/export family protein | At1D1609_RS16810 | Not Available | Positive | 259699 - 260895 | 42428.5 |
| efflux rnd transporter periplasmic adaptor subunit | At1D1609_RS16815 | Not Available | Positive | 261185 - 262462 | 44987.9 |
| efflux rnd transporter permease subunit | At1D1609_RS16820 | Not Available | Positive | 262459 - 265599 | 111346.0 |
| invasion associated locus b family protein | At1D1609_RS16825 | Not Available | Negative | 265661 - 266236 | 20224.7 |
| autotransporter domain-containing protein | At1D1609_RS16830 | Not Available | Negative | 266236 - 270171 | 129472.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


