Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trap transporter large permease subunit | At1D1609_RS16740 | Not Available | Negative | 243080 - 244912 | 62561.5 |
| llm class flavin-dependent oxidoreductase | At1D1609_RS16745 | Not Available | Negative | 244942 - 246069 | 41365.6 |
| abc transporter substrate-binding protein | At1D1609_RS16750 | Not Available | Negative | 246066 - 246917 | 30152.7 |
| arsr/smtb family transcription factor | At1D1609_RS16755 | Not Available | Positive | 247129 - 247494 | 13323.3 |
| glutathione s-transferase family protein | At1D1609_RS16760 | Not Available | Positive | 247496 - 248125 | 23674.1 |
| abc transporter atp-binding protein | At1D1609_RS16765 | Not Available | Negative | 248122 - 249957 | 66678.9 |
| aminotransferase class v-fold plp-dependent enzyme | At1D1609_RS16770 | Not Available | Negative | 250167 - 251363 | 43003.8 |
| iclr family transcriptional regulator | At1D1609_RS16775 | Not Available | Positive | 251467 - 252288 | 29789.4 |
| rida family protein | At1D1609_RS16780 | Not Available | Negative | 252295 - 252789 | 17416.9 |
| amidohydrolase/deacetylase family metallohydrolase | At1D1609_RS16785 | Not Available | Negative | 252878 - 254101 | 44047.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


