Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fadr/gntr family transcriptional regulator | At1D1609_RS16690 | Not Available | Positive | 232062 - 232778 | 26489.5 |
| sialic acid trap transporter substrate-binding protein siap | At1D1609_RS16695 | Not Available | Positive | 232841 - 233815 | 36099.1 |
| trap transporter small permease | At1D1609_RS16700 | Not Available | Positive | 233876 - 234448 | 22139.0 |
| trap transporter large permease | At1D1609_RS16705 | Not Available | Positive | 234453 - 235859 | 50001.0 |
| l-idonate 5-dehydrogenase | At1D1609_RS16710 | Not Available | Positive | 235930 - 236976 | 36660.2 |
| mannonate dehydratase | At1D1609_RS16715 | Not Available | Positive | 236993 - 238201 | 44797.1 |
| type iv secretory system conjugative dna transfer family protein | At1D1609_RS16720 | Not Available | Negative | 238359 - 238709 | 12507.6 |
| aldehyde dehydrogenase (nadp(+)) | At1D1609_RS16725 | Not Available | Positive | 238954 - 240465 | 53270.4 |
| zinc metallochaperone aztd | At1D1609_RS16730 | Not Available | Positive | 240745 - 241995 | 45061.6 |
| trap transporter substrate-binding protein | At1D1609_RS16735 | Not Available | Negative | 242065 - 243063 | 36235.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


