Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycerate kinase | At1D1609_RS16590 | Not Available | Positive | 209753 - 211039 | 43655.4 |
| hypothetical protein | At1D1609_RS16595 | Not Available | Positive | 211158 - 211406 | 9011.16 |
| gfo/idh/moca family protein | At1D1609_RS16600 | Not Available | Negative | 211479 - 212666 | 42528.6 |
| sugar phosphate isomerase/epimerase family protein | At1D1609_RS16605 | Not Available | Negative | 212688 - 213740 | 38973.8 |
| abc transporter atp-binding protein | At1D1609_RS16610 | Not Available | Negative | 213886 - 214959 | 38541.8 |
| carbohydrate abc transporter permease | At1D1609_RS16615 | Not Available | Negative | 214977 - 215825 | 31549.4 |
| carbohydrate abc transporter permease | At1D1609_RS16620 | Not Available | Negative | 215818 - 216756 | 34403.9 |
| abc transporter substrate-binding protein | At1D1609_RS16625 | Not Available | Negative | 216824 - 218125 | 46273.7 |
| rok family transcriptional regulator | At1D1609_RS16630 | Not Available | Positive | 218321 - 219520 | 42521.3 |
| gfo/idh/moca family protein | At1D1609_RS16635 | Not Available | Positive | 219573 - 220673 | 38766.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


