Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sugar abc transporter atp-binding protein | At1D1609_RS16540 | Not Available | Positive | 197008 - 198531 | 54476.8 |
| abc transporter permease | At1D1609_RS16545 | Not Available | Positive | 198531 - 199574 | 35615.1 |
| galactofuranose abc transporter, permease protein yjff | At1D1609_RS16550 | Not Available | Positive | 199571 - 200551 | 34368.2 |
| fadr/gntr family transcriptional regulator | At1D1609_RS16555 | Not Available | Positive | 200570 - 201304 | 26191.6 |
| mfs transporter | At1D1609_RS16560 | Not Available | Negative | 201351 - 202568 | 41562.6 |
| arac family transcriptional regulator | At1D1609_RS16565 | Not Available | Positive | 202751 - 203689 | 34234.3 |
| error-prone dna polymerase | At1D1609_RS16570 | Not Available | Negative | 203698 - 206973 | 123176.0 |
| y-family dna polymerase | At1D1609_RS16575 | Not Available | Negative | 206970 - 208487 | 55545.1 |
| imua family protein | At1D1609_RS16580 | Not Available | Negative | 208402 - 209166 | 26965.6 |
| duf1304 domain-containing protein | At1D1609_RS16585 | Not Available | Positive | 209395 - 209748 | 12537.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


