Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | At1D1609_RS16490 | Not Available | Positive | 188369 - 189199 | 28475.8 |
| abc transporter atp-binding protein | At1D1609_RS16495 | Not Available | Positive | 189196 - 189999 | 28203.7 |
| abc transporter atp-binding protein | At1D1609_RS16500 | Not Available | Positive | 189996 - 190775 | 28110.4 |
| pyridoxal-phosphate-dependent aminotransferase family protein | At1D1609_RS16505 | Not Available | Positive | 190785 - 191903 | 38299.7 |
| hypothetical protein | At1D1609_RS29765 | Not Available | Positive | 192062 - 192256 | 7660.97 |
| helix-turn-helix domain-containing protein | At1D1609_RS16515 | Not Available | Positive | 192323 - 192805 | 18326.0 |
| voc family protein | At1D1609_RS16520 | Not Available | Positive | 192820 - 193224 | 15086.8 |
| hypothetical protein | At1D1609_RS16525 | Not Available | Positive | 193281 - 193490 | 7594.71 |
| ilvd/edd family dehydratase | At1D1609_RS16530 | Not Available | Negative | 193630 - 195450 | 65457.1 |
| galactofuranose abc transporter, galactofuranose-binding protein ytfq | At1D1609_RS16535 | Not Available | Positive | 195973 - 196932 | 33996.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


