Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| age family epimerase/isomerase | At1D1609_RS26815 | Not Available | Negative | 74523 - 74930 | 15023.8 |
| hypothetical protein | At1D1609_RS30080 | Not Available | Negative | 74843 - 75139 | 11198.4 |
| age family epimerase/isomerase | At1D1609_RS26820 | Not Available | Positive | 75043 - 75527 | 18365.5 |
| hypothetical protein | At1D1609_RS26830 | Not Available | Positive | 76654 - 77067 | 15623.7 |
| sis domain-containing protein | At1D1609_RS26840 | Not Available | Negative | 79006 - 80088 | 39129.1 |
| sdr family nad(p)-dependent oxidoreductase | At1D1609_RS26845 | Not Available | Positive | 80572 - 81864 | 46753.3 |
| m24 family metallopeptidase | At1D1609_RS26850 | Not Available | Negative | 82158 - 83345 | 43162.8 |
| hepn domain-containing protein | At1D1609_RS26860 | Not Available | Negative | 84556 - 85959 | 51751.2 |
| duf4160 domain-containing protein | At1D1609_RS26865 | Not Available | Negative | 86035 - 86778 | 28399.6 |
| age family epimerase/isomerase | At1D1609_RS30085 | Not Available | Positive | 86962 - 87084 | 4481.18 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


