Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| efflux rnd transporter permease subunit | At1D1609_RS16440 | Not Available | Negative | 170785 - 173919 | 111325.0 |
| efflux rnd transporter periplasmic adaptor subunit | At1D1609_RS16445 | Not Available | Negative | 173931 - 175121 | 42106.9 |
| sensor domain-containing diguanylate cyclase | At1D1609_RS16450 | Not Available | Negative | 175539 - 177044 | 57201.2 |
| bifunctional allantoicase/(s)-ureidoglycine aminohydrolase | At1D1609_RS16455 | Not Available | Negative | 177211 - 178035 | 30925.9 |
| class i sam-dependent methyltransferase | At1D1609_RS16460 | Not Available | Negative | 178128 - 179174 | 39060.6 |
| putative bifunctional diguanylate cyclase/phosphodiesterase | At1D1609_RS16465 | Not Available | Positive | 179491 - 181485 | 74374.8 |
| ldh family oxidoreductase | At1D1609_RS16470 | Not Available | Negative | 181529 - 182605 | 38307.8 |
| dna translocase ftsk | At1D1609_RS16475 | Not Available | Negative | 182698 - 185388 | 96222.6 |
| abc transporter substrate-binding protein | At1D1609_RS16480 | Not Available | Positive | 185763 - 187373 | 58200.9 |
| abc transporter permease | At1D1609_RS16485 | Not Available | Positive | 187383 - 188372 | 35066.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


