Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ompw/alkl family protein | At1D1609_RS16390 | Not Available | Negative | 159913 - 160611 | 24604.4 |
| mfs transporter | At1D1609_RS16395 | Not Available | Negative | 160922 - 162217 | 45967.9 |
| marr family winged helix-turn-helix transcriptional regulator | At1D1609_RS16400 | Not Available | Negative | 162307 - 162708 | 14401.5 |
| gnat family n-acetyltransferase | At1D1609_RS16405 | Not Available | Negative | 162856 - 163425 | 20212.4 |
| ornithine/lysine decarboxylase | At1D1609_RS16410 | Not Available | Negative | 163619 - 164752 | 41122.3 |
| lysr family transcriptional regulator | At1D1609_RS16415 | Not Available | Positive | 165290 - 166183 | 33253.5 |
| substrate-binding domain-containing protein | At1D1609_RS16420 | Not Available | Negative | 166240 - 167193 | 34367.2 |
| abc transporter permease | At1D1609_RS16425 | Not Available | Negative | 167266 - 168267 | 35012.9 |
| sugar abc transporter atp-binding protein | At1D1609_RS16430 | Not Available | Negative | 168318 - 169841 | 54528.4 |
| tetr family transcriptional regulator | At1D1609_RS16435 | Not Available | Negative | 170043 - 170666 | 23173.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


