Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| zinc abc transporter atp-binding protein azta | At1D1609_RS16340 | Not Available | Negative | 150273 - 151100 | 29694.6 |
| zinc metallochaperone gtpase ziga | At1D1609_RS16345 | Not Available | Positive | 151398 - 152603 | 44878.5 |
| yqaa family protein | At1D1609_RS16350 | Not Available | Negative | 152760 - 153197 | 15909.9 |
| hypothetical protein | At1D1609_RS16355 | Not Available | Negative | 153295 - 153564 | 9680.69 |
| cobw family gtp-binding protein | At1D1609_RS16360 | Not Available | Negative | 153561 - 154667 | 39708.5 |
| sn-glycerol-3-phosphate abc transporter substrate-binding protein ugpb | At1D1609_RS16365 | Not Available | Positive | 155006 - 156316 | 47203.0 |
| sn-glycerol-3-phosphate abc transporter permease ugpa | At1D1609_RS16370 | Not Available | Positive | 156386 - 157267 | 32275.0 |
| sn-glycerol-3-phosphate abc transporter permease ugpe | At1D1609_RS16375 | Not Available | Positive | 157278 - 158126 | 31697.1 |
| sn-glycerol-3-phosphate import atp-binding protein ugpc | At1D1609_RS16380 | Not Available | Positive | 158126 - 159187 | 38309.3 |
| glyoxalase superfamily protein | At1D1609_RS16385 | Not Available | Negative | 159260 - 159703 | 16207.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


