Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter atp-binding protein | At1D1609_RS16285 | Not Available | Positive | 139925 - 140923 | 36158.7 |
| abc transporter atp-binding protein | At1D1609_RS16295 | Not Available | Negative | 141362 - 142438 | 38665.8 |
| carbohydrate abc transporter permease | At1D1609_RS16300 | Not Available | Negative | 142443 - 143273 | 30410.1 |
| carbohydrate abc transporter permease | At1D1609_RS16305 | Not Available | Negative | 143277 - 144221 | 34617.1 |
| abc transporter substrate-binding protein | At1D1609_RS16310 | Not Available | Negative | 144373 - 145632 | 46317.3 |
| plp-dependent transferase | At1D1609_RS16315 | Not Available | Negative | 145671 - 146843 | 42236.8 |
| fadr/gntr family transcriptional regulator | At1D1609_RS16320 | Not Available | Negative | 146840 - 147532 | 25727.9 |
| ribonuclease h family protein | At1D1609_RS16325 | Not Available | Negative | 147761 - 148234 | 17443.5 |
| zinc abc transporter substrate-binding protein aztc | At1D1609_RS16330 | Not Available | Negative | 148360 - 149385 | 36404.5 |
| zinc abc transporter permease aztb | At1D1609_RS16335 | Not Available | Negative | 149414 - 150280 | 30239.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


